Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16760

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
3,801,823	-		PFLU_RS16755	0.12	-0.6
3,801,823	-		PFLU_RS16755	0.12	-1.5
3,801,833	-		PFLU_RS16755	0.13	+3.6
3,801,833	-		PFLU_RS16755	0.13	-2.7
3,801,869	+		PFLU_RS16755	0.17	+2.0
3,801,870	-		PFLU_RS16755	0.17	-0.6
3,801,963	+		PFLU_RS16755	0.27	+1.5
3,802,075	+		PFLU_RS16755	0.39	-2.0
3,802,075	+		PFLU_RS16755	0.39	-1.3
3,802,076	-		PFLU_RS16755	0.39	+0.8
3,802,076	-		PFLU_RS16755	0.39	+0.1
3,802,076	-		PFLU_RS16755	0.39	-1.3
3,802,076	-		PFLU_RS16755	0.39	-0.6
3,802,076	-		PFLU_RS16755	0.39	+0.1
3,802,076	-		PFLU_RS16755	0.39	+1.1
3,802,076	-		PFLU_RS16755	0.39	+0.6
3,802,076	-		PFLU_RS16755	0.39	-0.6
3,802,076	-		PFLU_RS16755	0.39	+0.5
3,802,077	+		PFLU_RS16755	0.39	-2.7
3,802,077	+		PFLU_RS16755	0.39	+1.1
3,802,077	+		PFLU_RS16755	0.39	-0.0
3,802,078	-		PFLU_RS16755	0.39	-0.7
3,802,078	-		PFLU_RS16755	0.39	-0.3
3,802,078	-		PFLU_RS16755	0.39	+1.3
3,802,122	+		PFLU_RS16755	0.44	+2.5
3,802,123	-		PFLU_RS16755	0.44	-2.4
3,802,281	+		PFLU_RS16755	0.61	-1.3
3,802,320	+		PFLU_RS16755	0.65	+0.4
3,802,320	+		PFLU_RS16755	0.65	+0.7
3,802,320	+		PFLU_RS16755	0.65	-1.9
3,802,649	-				+0.4
3,802,687	+				-0.5
3,802,687	+				+2.4
3,802,687	+				+0.7
3,802,687	+				-2.3
3,802,687	+				+0.4
3,802,687	+				-1.3
3,802,688	-				-0.3
3,802,688	-				-0.7
3,802,688	-				+1.1
3,802,692	+				-1.3
3,802,766	+				+2.3
3,802,767	-				+0.1
3,802,767	-				+1.0
3,802,819	+				-1.7
3,802,819	+				+2.3
3,802,819	+				-3.6
3,802,819	+				+1.2
3,802,819	+				-0.3
3,802,820	-		PFLU_RS16760	0.10	+1.6
3,802,820	-		PFLU_RS16760	0.10	-1.4
3,802,834	+		PFLU_RS16760	0.11	+0.4
3,802,834	+		PFLU_RS16760	0.11	-3.0
3,802,834	+		PFLU_RS16760	0.11	-0.7
3,802,834	+		PFLU_RS16760	0.11	-1.3
3,802,834	+		PFLU_RS16760	0.11	-2.1
3,802,835	-		PFLU_RS16760	0.12	-2.1
3,802,835	-		PFLU_RS16760	0.12	-0.3
3,802,835	-		PFLU_RS16760	0.12	-0.7
3,802,880	+		PFLU_RS16760	0.16	-2.4
3,802,880	+		PFLU_RS16760	0.16	+0.5
3,802,906	+		PFLU_RS16760	0.19	-1.7
3,803,063	+		PFLU_RS16760	0.34	-0.5
3,803,063	+		PFLU_RS16760	0.34	+0.6
3,803,064	-		PFLU_RS16760	0.35	+0.1
3,803,337	+		PFLU_RS16760	0.62	+1.1
3,803,431	+		PFLU_RS16760	0.71	+2.0
3,803,431	+		PFLU_RS16760	0.71	-2.5
3,803,431	+		PFLU_RS16760	0.71	+2.2
3,803,431	+		PFLU_RS16760	0.71	-0.3
3,803,431	+		PFLU_RS16760	0.71	+3.1
3,803,431	+		PFLU_RS16760	0.71	-1.1
3,803,431	+		PFLU_RS16760	0.71	-0.3
3,803,431	+		PFLU_RS16760	0.71	-1.7
3,803,431	+		PFLU_RS16760	0.71	-1.1
3,803,431	+		PFLU_RS16760	0.71	-0.9
3,803,431	+		PFLU_RS16760	0.71	+4.5
3,803,431	+		PFLU_RS16760	0.71	+0.1
3,803,431	+		PFLU_RS16760	0.71	+4.0
3,803,432	-		PFLU_RS16760	0.71	-0.4
3,803,432	-		PFLU_RS16760	0.71	-1.8
3,803,432	-		PFLU_RS16760	0.71	-1.9
3,803,432	-		PFLU_RS16760	0.71	+0.4
3,803,432	-		PFLU_RS16760	0.71	+3.0
3,803,432	-		PFLU_RS16760	0.71	-0.3
3,803,432	-		PFLU_RS16760	0.71	-1.3
3,803,432	-		PFLU_RS16760	0.71	-3.0
3,803,432	-		PFLU_RS16760	0.71	-1.4
3,803,432	-		PFLU_RS16760	0.71	+1.7
3,803,432	-		PFLU_RS16760	0.71	-1.4
3,803,448	+		PFLU_RS16760	0.73	-0.3
3,803,535	-		PFLU_RS16760	0.82	+1.8
3,803,535	-		PFLU_RS16760	0.82	-1.7
3,803,791	-				+1.3
3,803,791	-				-2.7
3,803,818	-				+2.2
3,803,831	+				+0.5
3,803,831	+				-2.3
3,803,831	+				+1.3
3,803,831	+				-2.2
3,803,832	-				-1.4
3,803,832	-				-0.6
3,803,832	-				-1.1
3,803,883	+				-0.2
3,803,883	+				-0.9
3,803,883	+				-0.8
3,803,883	+				-1.7
3,803,883	+				+0.3
3,803,884	-				-0.9
3,803,884	-				+2.4
3,803,884	-				-0.1
3,803,884	-				-0.3
3,803,884	-				+0.1
3,803,884	-				-1.1
3,803,885	+				-1.3
3,803,885	+				+0.1
3,803,885	+				+2.0
3,803,885	+				+1.3
3,803,885	+				-0.9
3,803,886	-				+3.3
3,803,931	+		PFLU_RS16765	0.11	+0.8
3,803,931	+		PFLU_RS16765	0.11	-0.4
3,803,932	-		PFLU_RS16765	0.12	-1.1
3,803,958	+		PFLU_RS16765	0.14	+1.2
3,803,958	+		PFLU_RS16765	0.14	-1.1
3,803,958	+		PFLU_RS16765	0.14	-0.9
3,803,958	+		PFLU_RS16765	0.14	+1.8
3,803,958	+		PFLU_RS16765	0.14	+0.1
3,803,958	+		PFLU_RS16765	0.14	+0.6
3,803,959	-		PFLU_RS16765	0.14	+1.0
3,803,959	-		PFLU_RS16765	0.14	+1.6
3,804,273	+		PFLU_RS16765	0.49	-0.3
3,804,273	+		PFLU_RS16765	0.49	+1.1
3,804,273	+		PFLU_RS16765	0.49	+0.1
3,804,274	-		PFLU_RS16765	0.49	+1.0
3,804,274	-		PFLU_RS16765	0.49	+1.5
3,804,274	-		PFLU_RS16765	0.49	-1.3
3,804,280	+		PFLU_RS16765	0.49	+0.6
3,804,334	+		PFLU_RS16765	0.55	+0.7
3,804,336	+		PFLU_RS16765	0.55	+0.1
3,804,336	+		PFLU_RS16765	0.55	-0.5
3,804,336	+		PFLU_RS16765	0.55	+3.4
3,804,336	+		PFLU_RS16765	0.55	+0.9
3,804,336	+		PFLU_RS16765	0.55	-2.2
3,804,337	-		PFLU_RS16765	0.55	+0.1
3,804,337	-		PFLU_RS16765	0.55	-1.6
3,804,337	-		PFLU_RS16765	0.55	+3.3
3,804,337	-		PFLU_RS16765	0.55	+0.1
3,804,337	-		PFLU_RS16765	0.55	-1.0
3,804,337	-		PFLU_RS16765	0.55	-0.3
3,804,337	-		PFLU_RS16765	0.55	+2.3
3,804,337	-		PFLU_RS16765	0.55	+2.5
3,804,337	-		PFLU_RS16765	0.55	+0.5
3,804,337	-		PFLU_RS16765	0.55	-1.1
3,804,337	-		PFLU_RS16765	0.55	-1.0
3,804,348	+		PFLU_RS16765	0.57	+2.5
3,804,349	-		PFLU_RS16765	0.57	-0.9
3,804,399	+		PFLU_RS16765	0.62	+0.9
3,804,399	+		PFLU_RS16765	0.62	-0.6
3,804,399	+		PFLU_RS16765	0.62	+0.9
3,804,399	+		PFLU_RS16765	0.62	+1.5
3,804,399	+		PFLU_RS16765	0.62	-2.0
3,804,399	+		PFLU_RS16765	0.62	+2.6
3,804,399	+		PFLU_RS16765	0.62	+2.1
3,804,399	+		PFLU_RS16765	0.62	+0.7
3,804,399	+		PFLU_RS16765	0.62	+1.7
3,804,400	-		PFLU_RS16765	0.62	-1.4
3,804,400	-		PFLU_RS16765	0.62	-0.4
3,804,519	+		PFLU_RS16765	0.75	+0.1
3,804,519	+		PFLU_RS16765	0.75	-0.3
3,804,520	-		PFLU_RS16765	0.75	-0.9
3,804,520	-		PFLU_RS16765	0.75	-0.3
3,804,520	-		PFLU_RS16765	0.75	+0.7
3,804,655	-				-1.7
3,804,707	+				-1.0
3,804,707	+				+1.7