Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15735

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
3,568,386	-				+0.5
3,568,386	-				+0.1
3,568,424	+		PFLU_RS31645	0.14	-2.7
3,568,425	-		PFLU_RS31645	0.14	+1.4
3,568,476	+		PFLU_RS31645	0.32	+2.7
3,568,477	-		PFLU_RS31645	0.32	-1.8
3,568,487	+		PFLU_RS31645	0.36	-0.9
3,568,502	+		PFLU_RS31645	0.41	+0.7
3,568,503	-		PFLU_RS31645	0.41	+2.3
3,568,521	-		PFLU_RS31645	0.48	-2.2
3,568,689	-				+0.4
3,568,836	+				+0.1
3,568,837	-				-0.3
3,568,837	-				+1.4
3,568,906	+				+2.9
3,568,907	-				+0.1
3,568,907	-				-1.8
3,568,958	+				+0.2
3,568,958	+				-0.3
3,568,958	+				-0.9
3,568,959	-				+0.1
3,569,013	-				-0.7
3,569,203	+				+1.7
3,569,203	+				+0.3
3,569,203	+				+2.9
3,569,204	-				-1.2
3,569,204	-				-2.0
3,569,204	-				-0.7
3,569,204	-				+0.8
3,569,206	+				-1.1
3,569,207	-				-1.7
3,569,207	-				-0.3
3,569,207	-				-0.8
3,569,207	-				+2.1
3,569,207	-				-0.3
3,569,303	-				+1.7
3,569,318	+				+1.7
3,569,368	-				-0.3
3,569,368	-				+2.2
3,569,500	+		PFLU_RS15735	0.15	+0.8
3,569,500	+		PFLU_RS15735	0.15	+0.8
3,569,500	+		PFLU_RS15735	0.15	-0.7
3,569,500	+		PFLU_RS15735	0.15	-1.3
3,569,500	+		PFLU_RS15735	0.15	-1.1
3,569,500	+		PFLU_RS15735	0.15	+1.1
3,569,501	-		PFLU_RS15735	0.16	-1.7
3,569,501	-		PFLU_RS15735	0.16	+0.5
3,569,501	-		PFLU_RS15735	0.16	-1.5
3,569,501	-		PFLU_RS15735	0.16	-1.8
3,569,501	-		PFLU_RS15735	0.16	+1.0
3,569,501	-		PFLU_RS15735	0.16	-0.7
3,569,611	+		PFLU_RS15735	0.25	+1.7
3,569,611	+		PFLU_RS15735	0.25	+1.4
3,569,716	+		PFLU_RS15735	0.34	-1.8
3,569,716	+		PFLU_RS15735	0.34	+0.7
3,569,827	+		PFLU_RS15735	0.44	+0.1
3,569,828	-		PFLU_RS15735	0.44	-0.7
3,569,980	+		PFLU_RS15735	0.57	+0.7
3,569,980	+		PFLU_RS15735	0.57	+1.7
3,569,980	+		PFLU_RS15735	0.57	-2.4
3,569,980	+		PFLU_RS15735	0.57	+0.7
3,569,981	-		PFLU_RS15735	0.58	-0.7
3,569,981	-		PFLU_RS15735	0.58	-1.7
3,569,981	-		PFLU_RS15735	0.58	+0.1
3,569,981	-		PFLU_RS15735	0.58	-0.3
3,570,151	+		PFLU_RS15735	0.72	-1.3
3,570,151	+		PFLU_RS15735	0.72	-0.9
3,570,151	+		PFLU_RS15735	0.72	+0.4
3,570,152	-		PFLU_RS15735	0.73	-0.9
3,570,160	+		PFLU_RS15735	0.73	-0.9
3,570,160	+		PFLU_RS15735	0.73	+0.3
3,570,160	+		PFLU_RS15735	0.73	-1.5
3,570,160	+		PFLU_RS15735	0.73	+0.7
3,570,161	-		PFLU_RS15735	0.73	-0.9
3,570,161	-		PFLU_RS15735	0.73	+0.1
3,570,161	-		PFLU_RS15735	0.73	-2.3
3,570,161	-		PFLU_RS15735	0.73	-1.1
3,570,161	-		PFLU_RS15735	0.73	-1.8
3,570,190	+		PFLU_RS15735	0.76	-2.7
3,570,203	-		PFLU_RS15735	0.77	+1.5
3,570,299	-		PFLU_RS15735	0.85	+4.5
3,570,311	+		PFLU_RS15735	0.86	+1.9
3,570,311	+		PFLU_RS15735	0.86	-2.1
3,570,311	+		PFLU_RS15735	0.86	+1.2
3,570,311	+		PFLU_RS15735	0.86	+1.3
3,570,312	-		PFLU_RS15735	0.87	+1.5
3,570,312	-		PFLU_RS15735	0.87	-0.7
3,570,312	-		PFLU_RS15735	0.87	+1.8
3,570,391	+				+1.8
3,570,391	+				+0.1
3,570,392	-				-0.9
3,570,392	-				+1.7
3,570,392	-				+2.4
3,570,397	+				+0.7
3,570,397	+				+0.3
3,570,397	+				+0.6
3,570,397	+				-2.9
3,570,397	+				+0.0
3,570,397	+				+0.4
3,570,398	-				+1.4
3,570,398	-				+0.7
3,570,398	-				-0.3
3,570,398	-				+1.7
3,570,477	+				+0.1
3,570,477	+				-1.0
3,570,477	+				+2.1
3,570,477	+				-0.9
3,570,478	-				+0.3
3,570,515	+				+0.7
3,570,515	+				+1.1
3,570,532	+				+0.7
3,570,532	+				+0.9
3,570,532	+				-1.9
3,570,533	-				+0.9
3,570,533	-				+0.8
3,570,579	+				+4.1
3,570,580	-				-1.0
3,570,580	-				-0.7
3,570,580	-				-0.5
3,570,825	+		PFLU_RS15740	0.24	-1.5
3,570,825	+		PFLU_RS15740	0.24	-2.3
3,570,825	+		PFLU_RS15740	0.24	+1.7
3,570,826	-		PFLU_RS15740	0.24	+3.1
3,570,826	-		PFLU_RS15740	0.24	+0.2
3,570,826	-		PFLU_RS15740	0.24	+0.3
3,571,020	+		PFLU_RS15740	0.40	-0.1
3,571,020	+		PFLU_RS15740	0.40	+1.7
3,571,021	-		PFLU_RS15740	0.41	+1.2
3,571,021	-		PFLU_RS15740	0.41	+3.4
3,571,024	+		PFLU_RS15740	0.41	+0.3
3,571,025	-		PFLU_RS15740	0.41	-0.9
3,571,025	-		PFLU_RS15740	0.41	+0.8
3,571,177	+		PFLU_RS15740	0.53	-0.2
3,571,177	+		PFLU_RS15740	0.53	-1.3
3,571,177	+		PFLU_RS15740	0.53	+1.2
3,571,177	+		PFLU_RS15740	0.53	+3.6
3,571,177	+		PFLU_RS15740	0.53	+1.3
3,571,177	+		PFLU_RS15740	0.53	+0.9
3,571,177	+		PFLU_RS15740	0.53	+2.3
3,571,177	+		PFLU_RS15740	0.53	+2.7
3,571,177	+		PFLU_RS15740	0.53	+1.4
3,571,177	+		PFLU_RS15740	0.53	-0.7
3,571,177	+		PFLU_RS15740	0.53	-1.3
3,571,177	+		PFLU_RS15740	0.53	-0.7
3,571,178	-		PFLU_RS15740	0.54	+1.6
3,571,178	-		PFLU_RS15740	0.54	-2.2
3,571,178	-		PFLU_RS15740	0.54	+0.7
3,571,178	-		PFLU_RS15740	0.54	+2.7
3,571,178	-		PFLU_RS15740	0.54	+0.1
3,571,178	-		PFLU_RS15740	0.54	-0.7
3,571,232	-		PFLU_RS15740	0.58	+1.8
3,571,236	-		PFLU_RS15740	0.58	+1.4
3,571,236	-		PFLU_RS15740	0.58	+2.7
3,571,283	-		PFLU_RS15740	0.62	+1.7
3,571,283	-		PFLU_RS15740	0.62	-0.9
3,571,351	+		PFLU_RS15740	0.68	-1.3
3,571,352	-		PFLU_RS15740	0.68	+0.7
3,571,414	-		PFLU_RS15740	0.73	-0.8
3,571,414	-		PFLU_RS15740	0.73	-0.9
3,571,448	+		PFLU_RS15740	0.76	+0.5