Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11400

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
2,527,503	+		PFLU_RS11395	0.39	-1.5
2,527,503	+		PFLU_RS11395	0.39	+0.1
2,527,504	-		PFLU_RS11395	0.39	-1.7
2,527,504	-		PFLU_RS11395	0.39	+1.1
2,527,504	-		PFLU_RS11395	0.39	-0.7
2,527,504	-		PFLU_RS11395	0.39	-1.3
2,527,504	-		PFLU_RS11395	0.39	-0.1
2,527,599	+		PFLU_RS11395	0.50	-0.7
2,527,599	+		PFLU_RS11395	0.50	-0.5
2,527,600	-		PFLU_RS11395	0.50	-0.2
2,527,600	-		PFLU_RS11395	0.50	-1.6
2,527,603	+		PFLU_RS11395	0.51	+1.0
2,527,603	+		PFLU_RS11395	0.51	+2.1
2,527,603	+		PFLU_RS11395	0.51	-2.5
2,527,604	-		PFLU_RS11395	0.51	+2.4
2,527,702	-		PFLU_RS11395	0.62	-2.3
2,527,929	+		PFLU_RS11395	0.88	+1.9
2,527,929	+		PFLU_RS11395	0.88	+3.3
2,527,929	+		PFLU_RS11395	0.88	+0.2
2,527,929	+		PFLU_RS11395	0.88	-1.7
2,527,930	-		PFLU_RS11395	0.88	-2.2
2,527,930	-		PFLU_RS11395	0.88	+2.5
2,527,930	-		PFLU_RS11395	0.88	-0.1
2,527,930	-		PFLU_RS11395	0.88	-0.6
2,527,930	-		PFLU_RS11395	0.88	+0.8
2,527,950	+				+0.5
2,527,951	-				-0.4
2,527,951	-				-0.2
2,527,951	-				+0.3
2,527,951	-				-1.7
2,527,951	-				-0.3
2,528,148	+				+0.3
2,528,148	+				-2.1
2,528,149	-				-1.0
2,528,149	-				+1.6
2,528,151	-				-2.7
2,528,295	-		PFLU_RS31560	0.62	-0.2
2,528,361	+				-2.2
2,528,361	+				-1.9
2,528,422	+				+0.8
2,528,422	+				-1.5
2,528,422	+				+0.5
2,528,422	+				+2.8
2,528,469	+				+1.3
2,528,571	+		PFLU_RS11400	0.20	+0.3
2,528,685	+		PFLU_RS11400	0.39	-1.2
2,528,685	+		PFLU_RS11400	0.39	-0.7
2,528,685	+		PFLU_RS11400	0.39	-1.2
2,528,685	+		PFLU_RS11400	0.39	+2.8
2,528,685	+		PFLU_RS11400	0.39	+0.2
2,528,685	+		PFLU_RS11400	0.39	+0.1
2,528,685	+		PFLU_RS11400	0.39	-0.2
2,528,686	-		PFLU_RS11400	0.39	+1.1
2,528,686	-		PFLU_RS11400	0.39	-1.3
2,528,686	-		PFLU_RS11400	0.39	-0.0
2,528,686	-		PFLU_RS11400	0.39	+0.6
2,528,686	-		PFLU_RS11400	0.39	-1.3
2,528,686	-		PFLU_RS11400	0.39	+3.8
2,528,717	-		PFLU_RS11400	0.45	+0.5
2,528,733	+		PFLU_RS11400	0.47	+2.6
2,528,733	+		PFLU_RS11400	0.47	+0.1
2,528,733	+		PFLU_RS11400	0.47	+3.2
2,528,733	+		PFLU_RS11400	0.47	+0.5
2,528,733	+		PFLU_RS11400	0.47	-0.5
2,528,733	+		PFLU_RS11400	0.47	-0.2
2,528,733	+		PFLU_RS11400	0.47	-1.5
2,528,733	+		PFLU_RS11400	0.47	+1.8
2,528,733	+		PFLU_RS11400	0.47	+0.3
2,528,733	+		PFLU_RS11400	0.47	+2.7
2,528,733	+		PFLU_RS11400	0.47	-1.7
2,528,734	-		PFLU_RS11400	0.47	+0.3
2,528,734	-		PFLU_RS11400	0.47	-1.6
2,528,734	-		PFLU_RS11400	0.47	+1.8
2,528,734	-		PFLU_RS11400	0.47	-0.7
2,528,734	-		PFLU_RS11400	0.47	-0.1
2,528,734	-		PFLU_RS11400	0.47	+1.1
2,528,734	-		PFLU_RS11400	0.47	-0.7
2,528,734	-		PFLU_RS11400	0.47	+1.3
2,528,734	-		PFLU_RS11400	0.47	-1.7
2,528,734	-		PFLU_RS11400	0.47	-1.2
2,528,734	-		PFLU_RS11400	0.47	+1.3
2,528,734	-		PFLU_RS11400	0.47	-0.7
2,528,734	-		PFLU_RS11400	0.47	-1.7
2,528,734	-		PFLU_RS11400	0.47	-1.8
2,528,737	+		PFLU_RS11400	0.48	-1.9
2,528,737	+		PFLU_RS11400	0.48	-2.2
2,528,737	+		PFLU_RS11400	0.48	+0.7
2,528,737	+		PFLU_RS11400	0.48	-1.3
2,528,737	+		PFLU_RS11400	0.48	-2.0
2,528,737	+		PFLU_RS11400	0.48	-1.7
2,528,737	+		PFLU_RS11400	0.48	+1.0
2,528,738	-		PFLU_RS11400	0.48	+1.6
2,528,738	-		PFLU_RS11400	0.48	-1.9
2,528,738	-		PFLU_RS11400	0.48	-0.3
2,528,738	-		PFLU_RS11400	0.48	-2.8
2,528,738	-		PFLU_RS11400	0.48	-2.5
2,528,738	-		PFLU_RS11400	0.48	+0.3
2,528,738	-		PFLU_RS11400	0.48	-0.0
2,528,738	-		PFLU_RS11400	0.48	+3.7
2,528,738	-		PFLU_RS11400	0.48	+0.5
2,528,738	-		PFLU_RS11400	0.48	-1.9
2,528,878	+		PFLU_RS11400	0.71	-0.6
2,528,878	+		PFLU_RS11400	0.71	-1.6
2,528,890	+		PFLU_RS11400	0.73	+1.6
2,528,891	-		PFLU_RS11400	0.73	-0.7
2,528,960	+		PFLU_RS11400	0.85	-1.2
2,528,960	+		PFLU_RS11400	0.85	-0.6
2,528,960	+		PFLU_RS11400	0.85	-2.3
2,528,961	-		PFLU_RS11400	0.85	+1.7
2,529,010	-				-0.1
2,529,010	-				+1.5
2,529,010	-				-2.9
2,529,139	+				-0.5
2,529,139	+				+1.4
2,529,139	+				-1.9
2,529,139	+				+1.3
2,529,140	-				+3.0
2,529,140	-				+2.0
2,529,143	+				+0.1
2,529,143	+				+2.9
2,529,143	+				-1.2
2,529,144	-				+0.3
2,529,144	-				-0.6
2,529,171	+				-1.2
2,529,171	+				+2.1
2,529,172	-				-1.5
2,529,172	-				+2.0
2,529,173	+				-1.2
2,529,173	+				+0.3
2,529,173	+				-2.1
2,529,173	+				+1.7
2,529,173	+				-0.7
2,529,173	+				-0.2
2,529,173	+				+0.1
2,529,173	+				+1.1
2,529,173	+				+1.7
2,529,173	+				-1.0
2,529,173	+				+0.0
2,529,173	+				-0.3
2,529,173	+				-1.0
2,529,173	+				+2.6
2,529,173	+				+2.4
2,529,173	+				-0.2
2,529,173	+				-1.0
2,529,173	+				-0.2
2,529,173	+				+0.8
2,529,173	+				+0.3
2,529,173	+				-1.6
2,529,173	+				+2.4
2,529,173	+				+2.4
2,529,174	-				+0.8
2,529,174	-				-0.9
2,529,174	-				-1.0
2,529,174	-				-2.2
2,529,174	-				-2.1
2,529,174	-				-2.1
2,529,174	-				+2.7
2,529,174	-				+0.3
2,529,174	-				-1.6
2,529,174	-				-0.7
2,529,174	-				+1.3
2,529,174	-				-1.4
2,529,174	-				+1.7
2,529,174	-				-0.9
2,529,174	-				-1.0
2,529,175	+				-0.2
2,529,175	+				-1.2
2,529,175	+				-1.0
2,529,176	-				+2.5
2,529,176	-				-0.7
2,529,176	-				-1.5
2,529,176	-				-0.5
2,529,176	-				+0.7
2,529,176	-				-2.4
2,529,176	-				+1.0
2,529,176	-				-1.7
2,529,287	+				-1.0
2,529,288	-				-2.0
2,529,380	+				-0.5
2,529,380	+				+0.0
2,529,380	+				+0.3
2,529,380	+				-0.7
2,529,380	+				-0.2
2,529,381	-				+1.7
2,529,381	-				-1.5
2,529,381	-				+0.8
2,529,381	-				-0.5
2,529,381	-				+1.6
2,529,403	+				-0.9
2,529,405	+				-0.4
2,529,405	+				-1.3
2,529,405	+				+0.6
2,529,405	+				+1.0
2,529,405	+				-1.0
2,529,405	+				+1.3
2,529,405	+				-0.3
2,529,405	+				+0.3
2,529,405	+				-0.3
2,529,405	+				-0.8
2,529,405	+				+0.2
2,529,405	+				+1.2
2,529,405	+				+1.8
2,529,405	+				-0.9
2,529,405	+				-2.6
2,529,405	+				-0.7
2,529,405	+				-0.0
2,529,405	+				-1.2
2,529,405	+				+0.4
2,529,405	+				-0.7
2,529,406	-				-2.9
2,529,406	-				-1.6
2,529,406	-				-0.3
2,529,406	-				-1.5
2,529,406	-				-1.5
2,529,406	-				-0.9
2,529,406	-				-1.2
2,529,406	-				+2.2
2,529,406	-				-2.0
2,529,406	-				+0.4
2,529,406	-				-2.7
2,529,406	-				+2.8
2,529,406	-				-1.7
2,529,406	-				-1.3
2,529,406	-				-0.4
2,529,641	+		PFLU_RS11405	0.23	+1.3
2,529,641	+		PFLU_RS11405	0.23	-2.3
2,529,641	+		PFLU_RS11405	0.23	+1.1
2,529,642	-		PFLU_RS11405	0.23	-1.3
2,529,788	+		PFLU_RS11405	0.34	+2.3
2,529,789	-		PFLU_RS11405	0.34	-1.0
2,529,794	+		PFLU_RS11405	0.35	+3.1
2,529,794	+		PFLU_RS11405	0.35	-0.7
2,529,794	+		PFLU_RS11405	0.35	-1.7
2,529,794	+		PFLU_RS11405	0.35	+0.4
2,529,794	+		PFLU_RS11405	0.35	-0.2
2,529,795	-		PFLU_RS11405	0.35	-1.7
2,529,795	-		PFLU_RS11405	0.35	+0.1
2,529,795	-		PFLU_RS11405	0.35	+1.7
2,529,795	-		PFLU_RS11405	0.35	-1.0
2,529,795	-		PFLU_RS11405	0.35	-1.2
2,529,795	-		PFLU_RS11405	0.35	-3.2
2,529,795	-		PFLU_RS11405	0.35	-0.2
2,529,869	+		PFLU_RS11405	0.40	+1.4
2,529,869	+		PFLU_RS11405	0.40	+0.6
2,529,914	+		PFLU_RS11405	0.44	+0.8
2,529,914	+		PFLU_RS11405	0.44	+4.4
2,529,914	+		PFLU_RS11405	0.44	+1.3
2,529,914	+		PFLU_RS11405	0.44	+2.4
2,529,914	+		PFLU_RS11405	0.44	-1.6
2,529,914	+		PFLU_RS11405	0.44	-0.7
2,529,914	+		PFLU_RS11405	0.44	+2.7
2,529,914	+		PFLU_RS11405	0.44	+0.5
2,529,915	-		PFLU_RS11405	0.44	-1.0
2,529,915	-		PFLU_RS11405	0.44	-1.2
2,529,915	-		PFLU_RS11405	0.44	-1.2
2,529,915	-		PFLU_RS11405	0.44	-0.5
2,529,915	-		PFLU_RS11405	0.44	+0.8
2,529,915	-		PFLU_RS11405	0.44	-0.2
2,529,920	+		PFLU_RS11405	0.44	+2.5
2,529,920	+		PFLU_RS11405	0.44	-1.0
2,529,920	+		PFLU_RS11405	0.44	-0.5
2,529,920	+		PFLU_RS11405	0.44	-1.3
2,529,920	+		PFLU_RS11405	0.44	-1.0
2,529,920	+		PFLU_RS11405	0.44	+0.3
2,529,921	-		PFLU_RS11405	0.44	+0.2
2,529,921	-		PFLU_RS11405	0.44	-1.7
2,529,921	-		PFLU_RS11405	0.44	-1.2
2,529,921	-		PFLU_RS11405	0.44	-2.7
2,529,921	-		PFLU_RS11405	0.44	-1.1