Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04730

Experiment: 4-Aminobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04725 and PFLU_RS04730 are separated by 66 nucleotidesPFLU_RS04730 and PFLU_RS04735 are separated by 112 nucleotides PFLU_RS04725: PFLU_RS04725 - cell division protein FtsA, at 1,055,807 to 1,057,069 _RS04725 PFLU_RS04730: PFLU_RS04730 - cell division protein FtsZ, at 1,057,136 to 1,058,341 _RS04730 PFLU_RS04735: PFLU_RS04735 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,058,454 to 1,059,365 _RS04735 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1057.091 kb on + strandat 1057.091 kb on + strandat 1058.349 kb on + strandat 1058.349 kb on + strandat 1058.358 kb on + strandat 1058.359 kb on - strandat 1058.396 kb on + strandat 1058.396 kb on + strandat 1058.396 kb on + strandat 1058.396 kb on + strandat 1059.339 kb on + strandat 1059.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C)
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1,057,091 + -2.1
1,057,091 + +0.1
1,058,349 + +0.8
1,058,349 + -0.0
1,058,358 + -0.7
1,058,359 - -0.1
1,058,396 + +1.4
1,058,396 + -0.1
1,058,396 + +4.2
1,058,396 + +3.5
1,059,339 + +0.9
1,059,339 + +1.2

Or see this region's nucleotide sequence