Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_956

Experiment: Ying_Others16 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_954 and Pf6N2E2_955 are separated by 17 nucleotidesPf6N2E2_955 and Pf6N2E2_956 are separated by 7 nucleotidesPf6N2E2_956 and Pf6N2E2_957 are separated by 17 nucleotidesPf6N2E2_957 and Pf6N2E2_958 are separated by 236 nucleotides Pf6N2E2_954 - Possible exported protein, at 1,126,014 to 1,126,634 _954 Pf6N2E2_955 - FIG00953508: hypothetical protein, at 1,126,652 to 1,127,065 _955 Pf6N2E2_956 - FIG01210404: hypothetical protein, at 1,127,073 to 1,127,444 _956 Pf6N2E2_957 - hypothetical protein, at 1,127,462 to 1,127,578 _957 Pf6N2E2_958 - hypothetical protein, at 1,127,815 to 1,127,934 _958 Position (kb) 1127 1128Strain fitness (log2 ratio) -2 -1 0 1at 1126.165 kb on + strand, within Pf6N2E2_954at 1126.166 kb on - strand, within Pf6N2E2_954at 1126.168 kb on + strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954at 1126.169 kb on - strand, within Pf6N2E2_954at 1126.321 kb on + strand, within Pf6N2E2_954at 1126.375 kb on + strand, within Pf6N2E2_954at 1126.375 kb on + strand, within Pf6N2E2_954at 1126.376 kb on - strand, within Pf6N2E2_954at 1126.376 kb on - strand, within Pf6N2E2_954at 1126.376 kb on - strand, within Pf6N2E2_954at 1126.438 kb on + strand, within Pf6N2E2_954at 1126.438 kb on + strand, within Pf6N2E2_954at 1126.439 kb on - strand, within Pf6N2E2_954at 1126.439 kb on - strand, within Pf6N2E2_954at 1126.439 kb on - strand, within Pf6N2E2_954at 1126.439 kb on - strand, within Pf6N2E2_954at 1126.453 kb on + strand, within Pf6N2E2_954at 1126.454 kb on - strand, within Pf6N2E2_954at 1126.454 kb on - strand, within Pf6N2E2_954at 1126.454 kb on - strand, within Pf6N2E2_954at 1126.454 kb on - strand, within Pf6N2E2_954at 1126.472 kb on + strand, within Pf6N2E2_954at 1126.515 kb on + strand, within Pf6N2E2_954at 1126.515 kb on + strand, within Pf6N2E2_954at 1126.515 kb on + strand, within Pf6N2E2_954at 1126.515 kb on + strand, within Pf6N2E2_954at 1126.576 kb on - strandat 1126.841 kb on + strand, within Pf6N2E2_955at 1126.841 kb on + strand, within Pf6N2E2_955at 1126.842 kb on - strand, within Pf6N2E2_955at 1126.842 kb on - strand, within Pf6N2E2_955at 1127.168 kb on + strand, within Pf6N2E2_956at 1127.169 kb on - strand, within Pf6N2E2_956at 1127.191 kb on + strand, within Pf6N2E2_956at 1127.191 kb on + strand, within Pf6N2E2_956at 1127.192 kb on - strand, within Pf6N2E2_956at 1127.269 kb on + strand, within Pf6N2E2_956at 1127.275 kb on + strand, within Pf6N2E2_956at 1127.276 kb on - strand, within Pf6N2E2_956at 1127.276 kb on - strand, within Pf6N2E2_956at 1127.603 kb on + strandat 1127.812 kb on - strandat 1127.812 kb on - strandat 1127.877 kb on + strand, within Pf6N2E2_958at 1127.878 kb on - strand, within Pf6N2E2_958at 1127.878 kb on - strand, within Pf6N2E2_958at 1127.878 kb on - strand, within Pf6N2E2_958at 1127.937 kb on + strandat 1127.938 kb on - strandat 1128.049 kb on - strandat 1128.052 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
remove
1,126,165 + Pf6N2E2_954 0.24 +0.4
1,126,166 - Pf6N2E2_954 0.24 +1.4
1,126,168 + Pf6N2E2_954 0.25 -0.6
1,126,169 - Pf6N2E2_954 0.25 +0.4
1,126,169 - Pf6N2E2_954 0.25 +0.4
1,126,169 - Pf6N2E2_954 0.25 +0.4
1,126,321 + Pf6N2E2_954 0.49 +0.4
1,126,375 + Pf6N2E2_954 0.58 -0.6
1,126,375 + Pf6N2E2_954 0.58 +0.4
1,126,376 - Pf6N2E2_954 0.58 +0.4
1,126,376 - Pf6N2E2_954 0.58 +0.4
1,126,376 - Pf6N2E2_954 0.58 -0.6
1,126,438 + Pf6N2E2_954 0.68 -0.5
1,126,438 + Pf6N2E2_954 0.68 +0.4
1,126,439 - Pf6N2E2_954 0.68 -0.6
1,126,439 - Pf6N2E2_954 0.68 +0.4
1,126,439 - Pf6N2E2_954 0.68 -0.5
1,126,439 - Pf6N2E2_954 0.68 -0.3
1,126,453 + Pf6N2E2_954 0.71 +0.4
1,126,454 - Pf6N2E2_954 0.71 +0.4
1,126,454 - Pf6N2E2_954 0.71 +0.4
1,126,454 - Pf6N2E2_954 0.71 +0.4
1,126,454 - Pf6N2E2_954 0.71 +1.4
1,126,472 + Pf6N2E2_954 0.74 -1.8
1,126,515 + Pf6N2E2_954 0.81 -0.6
1,126,515 + Pf6N2E2_954 0.81 +0.4
1,126,515 + Pf6N2E2_954 0.81 +0.4
1,126,515 + Pf6N2E2_954 0.81 +0.4
1,126,576 - +0.4
1,126,841 + Pf6N2E2_955 0.46 -0.7
1,126,841 + Pf6N2E2_955 0.46 -0.6
1,126,842 - Pf6N2E2_955 0.46 -0.3
1,126,842 - Pf6N2E2_955 0.46 -0.8
1,127,168 + Pf6N2E2_956 0.26 -0.6
1,127,169 - Pf6N2E2_956 0.26 -1.2
1,127,191 + Pf6N2E2_956 0.32 +0.4
1,127,191 + Pf6N2E2_956 0.32 -1.6
1,127,192 - Pf6N2E2_956 0.32 -0.6
1,127,269 + Pf6N2E2_956 0.53 +0.4
1,127,275 + Pf6N2E2_956 0.54 +0.4
1,127,276 - Pf6N2E2_956 0.55 -0.6
1,127,276 - Pf6N2E2_956 0.55 -1.6
1,127,603 + +0.4
1,127,812 - +0.4
1,127,812 - -0.6
1,127,877 + Pf6N2E2_958 0.52 +0.4
1,127,878 - Pf6N2E2_958 0.53 -0.6
1,127,878 - Pf6N2E2_958 0.53 -0.9
1,127,878 - Pf6N2E2_958 0.53 -1.2
1,127,937 + +0.4
1,127,938 - -0.6
1,128,049 - +0.4
1,128,052 - +0.4

Or see this region's nucleotide sequence