Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_852

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_850 and Pf6N2E2_851 are separated by 96 nucleotidesPf6N2E2_851 and Pf6N2E2_852 are separated by 227 nucleotidesPf6N2E2_852 and Pf6N2E2_853 are separated by 384 nucleotides Pf6N2E2_850 - hypothetical protein, at 995,361 to 995,474 _850 Pf6N2E2_851 - Osmotically inducible protein Y precursor, at 995,571 to 996,218 _851 Pf6N2E2_852 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 996,446 to 998,728 _852 Pf6N2E2_853 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 999,113 to 999,745 _853 Position (kb) 996 997 998 999Strain fitness (log2 ratio) -2 -1 0 1at 995.739 kb on - strand, within Pf6N2E2_851at 995.864 kb on - strand, within Pf6N2E2_851at 995.928 kb on + strand, within Pf6N2E2_851at 995.929 kb on - strand, within Pf6N2E2_851at 995.929 kb on - strand, within Pf6N2E2_851at 996.015 kb on + strand, within Pf6N2E2_851at 996.015 kb on + strand, within Pf6N2E2_851at 996.015 kb on + strand, within Pf6N2E2_851at 996.016 kb on - strand, within Pf6N2E2_851at 996.016 kb on - strand, within Pf6N2E2_851at 996.016 kb on - strandat 996.192 kb on - strandat 996.197 kb on + strandat 996.267 kb on + strandat 996.305 kb on + strandat 996.306 kb on - strandat 996.340 kb on + strandat 996.431 kb on + strandat 996.446 kb on - strandat 996.699 kb on + strand, within Pf6N2E2_852at 996.867 kb on + strand, within Pf6N2E2_852at 996.868 kb on - strand, within Pf6N2E2_852at 997.184 kb on + strand, within Pf6N2E2_852at 997.185 kb on - strand, within Pf6N2E2_852at 997.185 kb on - strand, within Pf6N2E2_852at 997.185 kb on - strand, within Pf6N2E2_852at 997.185 kb on - strand, within Pf6N2E2_852at 997.185 kb on - strand, within Pf6N2E2_852at 997.356 kb on + strand, within Pf6N2E2_852at 997.357 kb on - strand, within Pf6N2E2_852at 997.527 kb on + strand, within Pf6N2E2_852at 997.528 kb on - strand, within Pf6N2E2_852at 997.528 kb on - strand, within Pf6N2E2_852at 997.528 kb on - strand, within Pf6N2E2_852at 997.528 kb on - strand, within Pf6N2E2_852at 997.535 kb on + strand, within Pf6N2E2_852at 997.535 kb on + strand, within Pf6N2E2_852at 997.536 kb on - strand, within Pf6N2E2_852at 997.536 kb on - strand, within Pf6N2E2_852at 997.536 kb on - strand, within Pf6N2E2_852at 997.575 kb on + strand, within Pf6N2E2_852at 997.575 kb on + strand, within Pf6N2E2_852at 997.596 kb on + strand, within Pf6N2E2_852at 997.596 kb on + strand, within Pf6N2E2_852at 997.597 kb on - strand, within Pf6N2E2_852at 997.682 kb on + strand, within Pf6N2E2_852at 997.788 kb on + strand, within Pf6N2E2_852at 997.872 kb on + strand, within Pf6N2E2_852at 997.872 kb on + strand, within Pf6N2E2_852at 997.872 kb on + strand, within Pf6N2E2_852at 997.906 kb on + strand, within Pf6N2E2_852at 997.920 kb on + strand, within Pf6N2E2_852at 997.921 kb on - strand, within Pf6N2E2_852at 997.921 kb on - strand, within Pf6N2E2_852at 998.192 kb on + strand, within Pf6N2E2_852at 998.197 kb on - strand, within Pf6N2E2_852at 998.312 kb on + strand, within Pf6N2E2_852at 998.312 kb on + strand, within Pf6N2E2_852at 998.313 kb on - strand, within Pf6N2E2_852at 998.313 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.315 kb on - strand, within Pf6N2E2_852at 998.441 kb on + strand, within Pf6N2E2_852at 998.441 kb on + strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.442 kb on - strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.492 kb on + strand, within Pf6N2E2_852at 998.812 kb on + strandat 998.813 kb on - strandat 998.840 kb on + strandat 998.846 kb on + strandat 998.959 kb on + strandat 998.960 kb on - strandat 998.971 kb on - strandat 998.971 kb on - strandat 999.014 kb on + strandat 999.014 kb on + strandat 999.015 kb on - strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.021 kb on + strandat 999.022 kb on - strandat 999.022 kb on - strandat 999.022 kb on - strandat 999.041 kb on + strandat 999.042 kb on - strandat 999.042 kb on - strandat 999.100 kb on - strandat 999.114 kb on + strandat 999.115 kb on - strandat 999.115 kb on - strandat 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strandat 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.315 kb on + strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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995,739 - Pf6N2E2_851 0.26 +0.4
995,864 - Pf6N2E2_851 0.45 -0.6
995,928 + Pf6N2E2_851 0.55 -1.4
995,929 - Pf6N2E2_851 0.55 -0.9
995,929 - Pf6N2E2_851 0.55 +0.4
996,015 + Pf6N2E2_851 0.69 +0.4
996,015 + Pf6N2E2_851 0.69 +0.4
996,015 + Pf6N2E2_851 0.69 -0.9
996,016 - Pf6N2E2_851 0.69 +0.4
996,016 - Pf6N2E2_851 0.69 -1.6
996,016 - +0.4
996,192 - -1.6
996,197 + -0.6
996,267 + +0.4
996,305 + +0.4
996,306 - +0.2
996,340 + +0.4
996,431 + +0.4
996,446 - -0.9
996,699 + Pf6N2E2_852 0.11 +0.4
996,867 + Pf6N2E2_852 0.18 -0.6
996,868 - Pf6N2E2_852 0.18 +0.4
997,184 + Pf6N2E2_852 0.32 +0.4
997,185 - Pf6N2E2_852 0.32 +0.4
997,185 - Pf6N2E2_852 0.32 +0.4
997,185 - Pf6N2E2_852 0.32 +0.5
997,185 - Pf6N2E2_852 0.32 +0.4
997,185 - Pf6N2E2_852 0.32 +0.4
997,356 + Pf6N2E2_852 0.40 -0.8
997,357 - Pf6N2E2_852 0.40 +0.4
997,527 + Pf6N2E2_852 0.47 -0.6
997,528 - Pf6N2E2_852 0.47 -0.6
997,528 - Pf6N2E2_852 0.47 +0.4
997,528 - Pf6N2E2_852 0.47 +0.4
997,528 - Pf6N2E2_852 0.47 +0.4
997,535 + Pf6N2E2_852 0.48 -0.8
997,535 + Pf6N2E2_852 0.48 +0.4
997,536 - Pf6N2E2_852 0.48 +0.4
997,536 - Pf6N2E2_852 0.48 +0.4
997,536 - Pf6N2E2_852 0.48 +0.4
997,575 + Pf6N2E2_852 0.49 +0.4
997,575 + Pf6N2E2_852 0.49 -0.9
997,596 + Pf6N2E2_852 0.50 +0.4
997,596 + Pf6N2E2_852 0.50 -0.6
997,597 - Pf6N2E2_852 0.50 -0.7
997,682 + Pf6N2E2_852 0.54 -0.9
997,788 + Pf6N2E2_852 0.59 +0.4
997,872 + Pf6N2E2_852 0.62 +0.4
997,872 + Pf6N2E2_852 0.62 +0.4
997,872 + Pf6N2E2_852 0.62 +0.4
997,906 + Pf6N2E2_852 0.64 -0.6
997,920 + Pf6N2E2_852 0.65 +0.4
997,921 - Pf6N2E2_852 0.65 +0.4
997,921 - Pf6N2E2_852 0.65 +0.4
998,192 + Pf6N2E2_852 0.76 +0.4
998,197 - Pf6N2E2_852 0.77 -0.8
998,312 + Pf6N2E2_852 0.82 -0.6
998,312 + Pf6N2E2_852 0.82 -0.5
998,313 - Pf6N2E2_852 0.82 +0.4
998,313 - Pf6N2E2_852 0.82 +0.4
998,315 - Pf6N2E2_852 0.82 -1.6
998,315 - Pf6N2E2_852 0.82 +0.4
998,315 - Pf6N2E2_852 0.82 +0.4
998,441 + Pf6N2E2_852 0.87 +0.4
998,441 + Pf6N2E2_852 0.87 +0.4
998,442 - Pf6N2E2_852 0.87 -0.6
998,442 - Pf6N2E2_852 0.87 -0.6
998,442 - Pf6N2E2_852 0.87 -0.6
998,442 - Pf6N2E2_852 0.87 +0.4
998,492 + Pf6N2E2_852 0.90 +0.4
998,492 + Pf6N2E2_852 0.90 -1.6
998,492 + Pf6N2E2_852 0.90 -0.6
998,812 + +0.4
998,813 - -0.6
998,840 + -0.1
998,846 + -0.8
998,959 + +0.4
998,960 - +0.4
998,971 - +0.4
998,971 - -0.6
999,014 + -1.4
999,014 + -0.6
999,015 - +0.4
999,021 + -0.6
999,021 + +0.4
999,021 + -1.6
999,021 + -0.1
999,021 + -0.6
999,022 - +0.4
999,022 - -0.2
999,022 - +0.4
999,041 + +0.4
999,042 - -1.2
999,042 - +0.4
999,100 - +0.4
999,114 + +0.4
999,115 - -0.6
999,115 - -0.6
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 -0.6
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 -1.2
999,182 + Pf6N2E2_853 0.11 -0.4
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 +0.4
999,182 + Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 -1.2
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 -1.2
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.0
999,183 - Pf6N2E2_853 0.11 -2.4
999,183 - Pf6N2E2_853 0.11 +1.4
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -1.6
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 -1.3
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.9
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.4
999,184 + Pf6N2E2_853 0.11 +0.4
999,184 + Pf6N2E2_853 0.11 -0.6
999,184 + Pf6N2E2_853 0.11 +0.1
999,184 + Pf6N2E2_853 0.11 -0.6
999,184 + Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 -0.9
999,185 - Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 -1.0
999,185 - Pf6N2E2_853 0.11 +0.1
999,185 - Pf6N2E2_853 0.11 +0.4
999,185 - Pf6N2E2_853 0.11 -0.4
999,201 + Pf6N2E2_853 0.14 -1.2
999,201 + Pf6N2E2_853 0.14 +0.4
999,201 + Pf6N2E2_853 0.14 +0.4
999,315 + Pf6N2E2_853 0.32 +0.4
999,316 - Pf6N2E2_853 0.32 +0.4
999,316 - Pf6N2E2_853 0.32 +0.4
999,316 - Pf6N2E2_853 0.32 +0.4
999,488 - Pf6N2E2_853 0.59 +0.4
999,488 - Pf6N2E2_853 0.59 +0.4

Or see this region's nucleotide sequence