Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5036 and Pf6N2E2_5037 are separated by 28 nucleotides Pf6N2E2_5037 and Pf6N2E2_5038 are separated by 95 nucleotides
Pf6N2E2_5036 - Cobalt-zinc-cadmium resistance protein, at 5,811,920 to 5,812,813
_5036
Pf6N2E2_5037 - Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase), at 5,812,842 to 5,813,261
_5037
Pf6N2E2_5038 - ATP-dependent helicase HrpB, at 5,813,357 to 5,815,873
_5038
Position (kb) 5812
5813
5814 Strain fitness (log2 ratio) -1
0
1 at 5811.890 kb on - strand at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.443 kb on - strand, within Pf6N2E2_5036 at 5812.523 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036 at 5812.834 kb on - strand at 5813.048 kb on - strand, within Pf6N2E2_5037 at 5813.048 kb on - strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.179 kb on + strand, within Pf6N2E2_5037 at 5813.180 kb on - strand, within Pf6N2E2_5037 at 5813.255 kb on + strand at 5813.256 kb on - strand at 5813.261 kb on + strand at 5813.261 kb on + strand at 5813.261 kb on + strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.281 kb on - strand at 5813.281 kb on - strand at 5813.313 kb on + strand at 5813.314 kb on - strand at 5813.329 kb on - strand at 5813.330 kb on + strand at 5813.330 kb on + strand at 5813.386 kb on - strand at 5813.575 kb on + strand at 5813.709 kb on + strand, within Pf6N2E2_5038 at 5813.710 kb on - strand, within Pf6N2E2_5038
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 5,811,890 - +0.7 5,812,242 + Pf6N2E2_5036 0.36 -0.9 5,812,242 + Pf6N2E2_5036 0.36 -0.4 5,812,242 + Pf6N2E2_5036 0.36 -0.9 5,812,242 + Pf6N2E2_5036 0.36 +0.7 5,812,242 + Pf6N2E2_5036 0.36 -0.8 5,812,243 - Pf6N2E2_5036 0.36 -0.3 5,812,243 - Pf6N2E2_5036 0.36 +0.7 5,812,243 - Pf6N2E2_5036 0.36 -0.9 5,812,243 - Pf6N2E2_5036 0.36 -0.9 5,812,243 - Pf6N2E2_5036 0.36 -0.9 5,812,442 + Pf6N2E2_5036 0.58 -0.3 5,812,442 + Pf6N2E2_5036 0.58 -1.3 5,812,442 + Pf6N2E2_5036 0.58 -0.7 5,812,442 + Pf6N2E2_5036 0.58 +0.7 5,812,442 + Pf6N2E2_5036 0.58 -0.8 5,812,443 - Pf6N2E2_5036 0.59 -0.3 5,812,523 + Pf6N2E2_5036 0.67 -0.6 5,812,623 + Pf6N2E2_5036 0.79 +0.7 5,812,623 + Pf6N2E2_5036 0.79 +0.9 5,812,834 - +0.7 5,813,048 - Pf6N2E2_5037 0.49 -1.2 5,813,048 - Pf6N2E2_5037 0.49 -0.3 5,813,101 + Pf6N2E2_5037 0.62 -0.7 5,813,101 + Pf6N2E2_5037 0.62 -1.0 5,813,101 + Pf6N2E2_5037 0.62 -0.9 5,813,101 + Pf6N2E2_5037 0.62 -0.9 5,813,102 - Pf6N2E2_5037 0.62 +0.7 5,813,102 - Pf6N2E2_5037 0.62 +0.7 5,813,102 - Pf6N2E2_5037 0.62 -1.3 5,813,179 + Pf6N2E2_5037 0.80 +0.7 5,813,180 - Pf6N2E2_5037 0.80 +0.7 5,813,255 + +0.1 5,813,256 - +0.2 5,813,261 + -0.3 5,813,261 + +0.7 5,813,261 + -0.9 5,813,262 - +0.7 5,813,262 - +0.7 5,813,262 - -0.5 5,813,262 - +0.3 5,813,262 - +0.7 5,813,280 + -0.3 5,813,280 + +0.7 5,813,280 + -0.3 5,813,280 + +0.7 5,813,281 - +0.7 5,813,281 - -1.2 5,813,313 + -0.3 5,813,314 - -0.4 5,813,329 - +0.7 5,813,330 + +0.7 5,813,330 + -0.3 5,813,386 - -0.9 5,813,575 + +0.7 5,813,709 + Pf6N2E2_5038 0.14 -0.9 5,813,710 - Pf6N2E2_5038 0.14 -0.1
Or see this region's nucleotide sequence