Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_136 and Pf6N2E2_137 overlap by 1 nucleotides Pf6N2E2_137 and Pf6N2E2_138 are separated by 30 nucleotides
Pf6N2E2_136 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 185,041 to 186,099
_136
Pf6N2E2_137 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 186,099 to 187,634
_137
Pf6N2E2_138 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 187,665 to 188,594
_138
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 185.114 kb on + strand at 185.376 kb on - strand, within Pf6N2E2_136 at 185.557 kb on - strand, within Pf6N2E2_136 at 185.557 kb on - strand, within Pf6N2E2_136 at 185.928 kb on - strand, within Pf6N2E2_136 at 186.545 kb on - strand, within Pf6N2E2_137 at 186.547 kb on + strand, within Pf6N2E2_137 at 186.547 kb on + strand, within Pf6N2E2_137 at 186.547 kb on + strand, within Pf6N2E2_137 at 186.547 kb on + strand, within Pf6N2E2_137 at 186.548 kb on - strand, within Pf6N2E2_137 at 186.548 kb on - strand, within Pf6N2E2_137 at 186.548 kb on - strand, within Pf6N2E2_137 at 187.085 kb on - strand, within Pf6N2E2_137 at 187.168 kb on + strand, within Pf6N2E2_137 at 187.168 kb on + strand, within Pf6N2E2_137 at 187.168 kb on + strand, within Pf6N2E2_137 at 187.171 kb on + strand, within Pf6N2E2_137 at 187.171 kb on + strand, within Pf6N2E2_137 at 187.172 kb on - strand, within Pf6N2E2_137 at 187.293 kb on + strand, within Pf6N2E2_137 at 187.293 kb on + strand, within Pf6N2E2_137 at 187.294 kb on - strand, within Pf6N2E2_137 at 187.359 kb on + strand, within Pf6N2E2_137 at 187.360 kb on - strand, within Pf6N2E2_137 at 187.468 kb on + strand, within Pf6N2E2_137 at 187.585 kb on + strand at 187.585 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.634 kb on + strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.635 kb on - strand at 187.840 kb on - strand, within Pf6N2E2_138 at 187.840 kb on - strand, within Pf6N2E2_138 at 187.840 kb on - strand, within Pf6N2E2_138 at 188.005 kb on + strand, within Pf6N2E2_138 at 188.006 kb on - strand, within Pf6N2E2_138 at 188.171 kb on - strand, within Pf6N2E2_138 at 188.263 kb on + strand, within Pf6N2E2_138 at 188.326 kb on + strand, within Pf6N2E2_138 at 188.381 kb on - strand, within Pf6N2E2_138 at 188.515 kb on + strand at 188.540 kb on - strand at 188.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 185,114 + -0.2 185,376 - Pf6N2E2_136 0.32 -0.4 185,557 - Pf6N2E2_136 0.49 +0.6 185,557 - Pf6N2E2_136 0.49 +0.6 185,928 - Pf6N2E2_136 0.84 -0.4 186,545 - Pf6N2E2_137 0.29 +0.6 186,547 + Pf6N2E2_137 0.29 -0.4 186,547 + Pf6N2E2_137 0.29 -1.8 186,547 + Pf6N2E2_137 0.29 -1.0 186,547 + Pf6N2E2_137 0.29 -0.4 186,548 - Pf6N2E2_137 0.29 -1.0 186,548 - Pf6N2E2_137 0.29 -0.6 186,548 - Pf6N2E2_137 0.29 +0.6 187,085 - Pf6N2E2_137 0.64 +0.6 187,168 + Pf6N2E2_137 0.70 -2.0 187,168 + Pf6N2E2_137 0.70 +0.6 187,168 + Pf6N2E2_137 0.70 +0.6 187,171 + Pf6N2E2_137 0.70 +0.6 187,171 + Pf6N2E2_137 0.70 +0.6 187,172 - Pf6N2E2_137 0.70 +0.6 187,293 + Pf6N2E2_137 0.78 -0.4 187,293 + Pf6N2E2_137 0.78 +0.6 187,294 - Pf6N2E2_137 0.78 +0.6 187,359 + Pf6N2E2_137 0.82 +0.6 187,360 - Pf6N2E2_137 0.82 +0.6 187,468 + Pf6N2E2_137 0.89 -0.3 187,585 + +0.6 187,585 + +0.6 187,634 + -1.0 187,634 + +0.6 187,634 + +0.6 187,634 + -0.7 187,634 + +0.6 187,634 + -0.4 187,634 + +0.2 187,634 + +0.6 187,634 + +0.6 187,634 + -0.9 187,634 + -0.4 187,635 - +0.6 187,635 - +0.6 187,635 - +0.6 187,635 - -0.4 187,635 - +0.6 187,635 - -0.4 187,635 - +0.6 187,840 - Pf6N2E2_138 0.19 -2.4 187,840 - Pf6N2E2_138 0.19 -2.4 187,840 - Pf6N2E2_138 0.19 +0.6 188,005 + Pf6N2E2_138 0.37 -0.0 188,006 - Pf6N2E2_138 0.37 -1.0 188,171 - Pf6N2E2_138 0.54 +0.6 188,263 + Pf6N2E2_138 0.64 -0.4 188,326 + Pf6N2E2_138 0.71 +0.6 188,381 - Pf6N2E2_138 0.77 +1.6 188,515 + +0.6 188,540 - -0.4 188,540 - -0.3
Or see this region's nucleotide sequence