Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_767 and Pf6N2E2_768 are separated by 71 nucleotides Pf6N2E2_768 and Pf6N2E2_769 are separated by 1 nucleotides Pf6N2E2_769 and Pf6N2E2_770 are separated by 322 nucleotides
Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541
_767
Pf6N2E2_768 - Fap amyloid fibril minor component, at 879,613 to 880,206
_768
Pf6N2E2_769 - Fap unknown function protein, at 880,208 to 880,654
_769
Pf6N2E2_770 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 880,977 to 881,501
_770
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1 at 878.860 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.919 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.145 kb on + strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.268 kb on + strand, within Pf6N2E2_767 at 879.464 kb on - strand at 879.464 kb on - strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.544 kb on + strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.545 kb on - strand at 879.580 kb on + strand at 879.581 kb on - strand at 879.581 kb on - strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.590 kb on + strand at 879.591 kb on - strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.598 kb on + strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.599 kb on - strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.686 kb on - strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.206 kb on + strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.883 kb on + strand at 880.884 kb on - strand at 880.973 kb on + strand at 880.973 kb on + strand at 880.974 kb on - strand at 880.974 kb on - strand at 881.189 kb on - strand, within Pf6N2E2_770
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 878,860 + Pf6N2E2_767 0.30 +0.4 878,892 + Pf6N2E2_767 0.34 +0.4 878,892 + Pf6N2E2_767 0.34 -0.6 878,892 + Pf6N2E2_767 0.34 +0.4 878,892 + Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 -0.6 878,893 - Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 -0.5 878,893 - Pf6N2E2_767 0.34 +0.8 878,919 + Pf6N2E2_767 0.36 -0.6 879,135 + Pf6N2E2_767 0.59 -0.6 879,135 + Pf6N2E2_767 0.59 +0.4 879,135 + Pf6N2E2_767 0.59 +0.7 879,135 + Pf6N2E2_767 0.59 +0.4 879,136 - Pf6N2E2_767 0.59 -0.3 879,136 - Pf6N2E2_767 0.59 +0.4 879,136 - Pf6N2E2_767 0.59 +0.4 879,145 + Pf6N2E2_767 0.60 +0.8 879,191 - Pf6N2E2_767 0.64 -0.6 879,191 - Pf6N2E2_767 0.64 +0.4 879,268 + Pf6N2E2_767 0.72 +0.4 879,464 - -0.6 879,464 - +0.4 879,544 + +0.4 879,544 + -0.8 879,544 + +0.4 879,544 + -1.6 879,544 + -1.8 879,544 + +0.4 879,545 - +0.4 879,545 - -0.8 879,545 - +0.4 879,580 + -0.6 879,581 - -0.1 879,581 - -0.6 879,590 + -1.5 879,590 + +0.4 879,590 + -1.2 879,590 + -0.6 879,590 + -0.6 879,591 - -0.6 879,598 + +0.4 879,598 + -1.6 879,598 + -0.1 879,598 + +0.4 879,599 - -0.6 879,599 - -0.0 879,599 - +0.4 879,599 - +0.2 879,599 - -0.1 879,602 + -1.8 879,602 + -0.9 879,602 + +0.4 879,602 + -0.6 879,602 + +0.4 879,602 + -0.6 879,602 + +0.4 879,602 + -0.6 879,602 + -0.6 879,602 + +0.4 879,602 + -0.6 879,603 - +0.2 879,603 - +0.4 879,603 - +0.4 879,686 - Pf6N2E2_768 0.12 -0.6 880,082 + Pf6N2E2_768 0.79 -1.0 880,082 + Pf6N2E2_768 0.79 +0.4 880,082 + Pf6N2E2_768 0.79 +0.4 880,082 + Pf6N2E2_768 0.79 +0.4 880,144 + Pf6N2E2_768 0.89 -1.6 880,144 + Pf6N2E2_768 0.89 +0.4 880,145 - Pf6N2E2_768 0.90 -2.4 880,145 - Pf6N2E2_768 0.90 -0.6 880,206 + -0.6 880,207 - -0.2 880,207 - -0.6 880,207 - +0.4 880,883 + +0.4 880,884 - +0.4 880,973 + +0.4 880,973 + -0.1 880,974 - +0.4 880,974 - +0.4 881,189 - Pf6N2E2_770 0.40 -0.6
Or see this region's nucleotide sequence