Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5191

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5189 and Pf6N2E2_5190 are separated by 132 nucleotidesPf6N2E2_5190 and Pf6N2E2_5191 are separated by 10 nucleotidesPf6N2E2_5191 and Pf6N2E2_5192 are separated by 179 nucleotides Pf6N2E2_5189 - Phosphotransferase system, HPr-related proteins, at 5,985,226 to 5,985,630 _5189 Pf6N2E2_5190 - Carbonic anhydrase (EC 4.2.1.1), at 5,985,763 to 5,986,407 _5190 Pf6N2E2_5191 - Conserved domain protein, at 5,986,418 to 5,986,945 _5191 Pf6N2E2_5192 - FIG00953119: hypothetical protein, at 5,987,125 to 5,988,285 _5192 Position (kb) 5986 5987Strain fitness (log2 ratio) -3 -2 -1 0 1at 5985.643 kb on + strandat 5985.644 kb on - strandat 5985.655 kb on + strandat 5985.655 kb on + strandat 5985.656 kb on - strandat 5985.742 kb on + strandat 5985.742 kb on + strandat 5985.742 kb on + strandat 5985.742 kb on + strandat 5985.773 kb on + strandat 5985.773 kb on + strandat 5985.773 kb on + strandat 5985.774 kb on - strandat 5985.790 kb on - strandat 5985.871 kb on + strand, within Pf6N2E2_5190at 5985.947 kb on + strand, within Pf6N2E2_5190at 5985.947 kb on + strand, within Pf6N2E2_5190at 5985.947 kb on + strand, within Pf6N2E2_5190at 5985.947 kb on + strand, within Pf6N2E2_5190at 5985.948 kb on - strand, within Pf6N2E2_5190at 5985.948 kb on - strand, within Pf6N2E2_5190at 5985.948 kb on - strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.968 kb on + strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5985.969 kb on - strand, within Pf6N2E2_5190at 5986.141 kb on + strand, within Pf6N2E2_5190at 5986.142 kb on - strand, within Pf6N2E2_5190at 5986.142 kb on - strand, within Pf6N2E2_5190at 5986.142 kb on - strand, within Pf6N2E2_5190at 5986.142 kb on - strand, within Pf6N2E2_5190at 5986.144 kb on + strand, within Pf6N2E2_5190at 5986.144 kb on + strand, within Pf6N2E2_5190at 5986.144 kb on + strand, within Pf6N2E2_5190at 5986.144 kb on + strand, within Pf6N2E2_5190at 5986.145 kb on - strand, within Pf6N2E2_5190at 5986.145 kb on - strand, within Pf6N2E2_5190at 5986.145 kb on - strand, within Pf6N2E2_5190at 5986.245 kb on + strand, within Pf6N2E2_5190at 5986.245 kb on + strand, within Pf6N2E2_5190at 5986.306 kb on + strand, within Pf6N2E2_5190at 5986.306 kb on + strand, within Pf6N2E2_5190at 5986.307 kb on - strand, within Pf6N2E2_5190at 5986.307 kb on - strand, within Pf6N2E2_5190at 5986.307 kb on - strand, within Pf6N2E2_5190at 5986.516 kb on - strand, within Pf6N2E2_5191at 5986.516 kb on - strand, within Pf6N2E2_5191at 5986.516 kb on - strand, within Pf6N2E2_5191at 5986.545 kb on + strand, within Pf6N2E2_5191at 5986.569 kb on + strand, within Pf6N2E2_5191at 5986.643 kb on + strand, within Pf6N2E2_5191at 5986.643 kb on + strand, within Pf6N2E2_5191at 5986.643 kb on + strand, within Pf6N2E2_5191at 5986.644 kb on - strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.692 kb on + strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.693 kb on - strand, within Pf6N2E2_5191at 5986.894 kb on - strandat 5986.894 kb on - strandat 5986.939 kb on + strandat 5986.939 kb on + strandat 5986.939 kb on + strandat 5986.940 kb on - strandat 5986.964 kb on + strandat 5987.022 kb on + strandat 5987.022 kb on + strandat 5987.023 kb on - strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.050 kb on + strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.051 kb on - strandat 5987.156 kb on - strandat 5987.243 kb on + strand, within Pf6N2E2_5192at 5987.243 kb on + strand, within Pf6N2E2_5192at 5987.243 kb on + strand, within Pf6N2E2_5192at 5987.243 kb on + strand, within Pf6N2E2_5192at 5987.423 kb on + strand, within Pf6N2E2_5192at 5987.423 kb on + strand, within Pf6N2E2_5192at 5987.423 kb on + strand, within Pf6N2E2_5192at 5987.423 kb on + strand, within Pf6N2E2_5192at 5987.424 kb on - strand, within Pf6N2E2_5192at 5987.424 kb on - strand, within Pf6N2E2_5192at 5987.453 kb on + strand, within Pf6N2E2_5192at 5987.453 kb on + strand, within Pf6N2E2_5192at 5987.453 kb on + strand, within Pf6N2E2_5192at 5987.453 kb on + strand, within Pf6N2E2_5192at 5987.453 kb on + strand, within Pf6N2E2_5192at 5987.454 kb on - strand, within Pf6N2E2_5192at 5987.454 kb on - strand, within Pf6N2E2_5192at 5987.657 kb on + strand, within Pf6N2E2_5192at 5987.657 kb on + strand, within Pf6N2E2_5192at 5987.657 kb on + strand, within Pf6N2E2_5192at 5987.658 kb on - strand, within Pf6N2E2_5192at 5987.658 kb on - strand, within Pf6N2E2_5192at 5987.658 kb on - strand, within Pf6N2E2_5192at 5987.658 kb on - strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.661 kb on + strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.662 kb on - strand, within Pf6N2E2_5192at 5987.663 kb on + strand, within Pf6N2E2_5192at 5987.663 kb on + strand, within Pf6N2E2_5192at 5987.663 kb on + strand, within Pf6N2E2_5192at 5987.663 kb on + strand, within Pf6N2E2_5192at 5987.663 kb on + strand, within Pf6N2E2_5192at 5987.664 kb on - strand, within Pf6N2E2_5192at 5987.664 kb on - strand, within Pf6N2E2_5192at 5987.732 kb on + strand, within Pf6N2E2_5192at 5987.733 kb on - strand, within Pf6N2E2_5192at 5987.810 kb on + strand, within Pf6N2E2_5192at 5987.811 kb on - strand, within Pf6N2E2_5192at 5987.834 kb on + strand, within Pf6N2E2_5192at 5987.835 kb on - strand, within Pf6N2E2_5192at 5987.906 kb on + strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.914 kb on - strand, within Pf6N2E2_5192at 5987.915 kb on + strand, within Pf6N2E2_5192at 5987.915 kb on + strand, within Pf6N2E2_5192at 5987.915 kb on + strand, within Pf6N2E2_5192at 5987.916 kb on - strand, within Pf6N2E2_5192at 5987.916 kb on - strand, within Pf6N2E2_5192

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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5,985,643 + +0.6
5,985,644 - -1.0
5,985,655 + +0.6
5,985,655 + +1.6
5,985,656 - +0.6
5,985,742 + +0.6
5,985,742 + +0.6
5,985,742 + +0.6
5,985,742 + -0.4
5,985,773 + -2.0
5,985,773 + +0.6
5,985,773 + -2.0
5,985,774 - -1.3
5,985,790 - +0.6
5,985,871 + Pf6N2E2_5190 0.17 +0.6
5,985,947 + Pf6N2E2_5190 0.29 +0.6
5,985,947 + Pf6N2E2_5190 0.29 +0.6
5,985,947 + Pf6N2E2_5190 0.29 -0.4
5,985,947 + Pf6N2E2_5190 0.29 -0.4
5,985,948 - Pf6N2E2_5190 0.29 +0.6
5,985,948 - Pf6N2E2_5190 0.29 +0.6
5,985,948 - Pf6N2E2_5190 0.29 +0.6
5,985,968 + Pf6N2E2_5190 0.32 +0.6
5,985,968 + Pf6N2E2_5190 0.32 +0.6
5,985,968 + Pf6N2E2_5190 0.32 -1.5
5,985,968 + Pf6N2E2_5190 0.32 -0.4
5,985,968 + Pf6N2E2_5190 0.32 -2.2
5,985,968 + Pf6N2E2_5190 0.32 +0.6
5,985,968 + Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 -1.0
5,985,969 - Pf6N2E2_5190 0.32 -1.7
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,985,969 - Pf6N2E2_5190 0.32 +0.6
5,986,141 + Pf6N2E2_5190 0.59 +0.6
5,986,142 - Pf6N2E2_5190 0.59 -1.7
5,986,142 - Pf6N2E2_5190 0.59 +0.6
5,986,142 - Pf6N2E2_5190 0.59 +0.6
5,986,142 - Pf6N2E2_5190 0.59 +0.6
5,986,144 + Pf6N2E2_5190 0.59 +0.6
5,986,144 + Pf6N2E2_5190 0.59 +0.6
5,986,144 + Pf6N2E2_5190 0.59 -2.4
5,986,144 + Pf6N2E2_5190 0.59 +0.6
5,986,145 - Pf6N2E2_5190 0.59 +0.6
5,986,145 - Pf6N2E2_5190 0.59 -0.4
5,986,145 - Pf6N2E2_5190 0.59 +0.6
5,986,245 + Pf6N2E2_5190 0.75 -2.5
5,986,245 + Pf6N2E2_5190 0.75 -0.4
5,986,306 + Pf6N2E2_5190 0.84 -0.4
5,986,306 + Pf6N2E2_5190 0.84 -3.5
5,986,307 - Pf6N2E2_5190 0.84 +0.6
5,986,307 - Pf6N2E2_5190 0.84 +0.6
5,986,307 - Pf6N2E2_5190 0.84 -0.4
5,986,516 - Pf6N2E2_5191 0.19 -1.4
5,986,516 - Pf6N2E2_5191 0.19 -0.4
5,986,516 - Pf6N2E2_5191 0.19 +0.6
5,986,545 + Pf6N2E2_5191 0.24 -1.4
5,986,569 + Pf6N2E2_5191 0.29 +0.6
5,986,643 + Pf6N2E2_5191 0.43 +0.6
5,986,643 + Pf6N2E2_5191 0.43 -0.3
5,986,643 + Pf6N2E2_5191 0.43 -0.4
5,986,644 - Pf6N2E2_5191 0.43 +0.6
5,986,692 + Pf6N2E2_5191 0.52 -1.0
5,986,692 + Pf6N2E2_5191 0.52 -1.2
5,986,692 + Pf6N2E2_5191 0.52 +0.6
5,986,692 + Pf6N2E2_5191 0.52 -0.7
5,986,692 + Pf6N2E2_5191 0.52 -1.0
5,986,692 + Pf6N2E2_5191 0.52 +0.6
5,986,692 + Pf6N2E2_5191 0.52 +0.6
5,986,692 + Pf6N2E2_5191 0.52 -1.4
5,986,692 + Pf6N2E2_5191 0.52 -1.0
5,986,692 + Pf6N2E2_5191 0.52 -0.4
5,986,692 + Pf6N2E2_5191 0.52 -1.2
5,986,692 + Pf6N2E2_5191 0.52 -0.2
5,986,692 + Pf6N2E2_5191 0.52 -1.0
5,986,692 + Pf6N2E2_5191 0.52 -0.4
5,986,692 + Pf6N2E2_5191 0.52 +0.6
5,986,692 + Pf6N2E2_5191 0.52 -0.8
5,986,692 + Pf6N2E2_5191 0.52 -2.5
5,986,692 + Pf6N2E2_5191 0.52 -0.4
5,986,692 + Pf6N2E2_5191 0.52 +0.6
5,986,692 + Pf6N2E2_5191 0.52 -1.0
5,986,692 + Pf6N2E2_5191 0.52 +0.1
5,986,693 - Pf6N2E2_5191 0.52 -0.2
5,986,693 - Pf6N2E2_5191 0.52 -0.7
5,986,693 - Pf6N2E2_5191 0.52 -0.4
5,986,693 - Pf6N2E2_5191 0.52 -0.4
5,986,693 - Pf6N2E2_5191 0.52 -0.4
5,986,693 - Pf6N2E2_5191 0.52 +0.6
5,986,693 - Pf6N2E2_5191 0.52 -0.7
5,986,693 - Pf6N2E2_5191 0.52 +0.6
5,986,693 - Pf6N2E2_5191 0.52 -1.0
5,986,693 - Pf6N2E2_5191 0.52 +0.6
5,986,693 - Pf6N2E2_5191 0.52 -0.4
5,986,693 - Pf6N2E2_5191 0.52 +0.6
5,986,894 - +0.6
5,986,894 - +0.6
5,986,939 + -1.0
5,986,939 + +0.6
5,986,939 + -0.4
5,986,940 - -0.5
5,986,964 + -0.4
5,987,022 + +0.6
5,987,022 + -1.4
5,987,023 - -0.4
5,987,050 + -0.6
5,987,050 + -0.5
5,987,050 + -2.5
5,987,050 + -0.4
5,987,050 + +0.6
5,987,050 + +0.9
5,987,050 + +0.0
5,987,051 - +0.6
5,987,051 - +0.6
5,987,051 - +0.6
5,987,051 - +1.6
5,987,051 - -0.9
5,987,051 - -0.4
5,987,051 - -0.2
5,987,156 - -0.2
5,987,243 + Pf6N2E2_5192 0.10 -1.1
5,987,243 + Pf6N2E2_5192 0.10 -1.0
5,987,243 + Pf6N2E2_5192 0.10 -0.5
5,987,243 + Pf6N2E2_5192 0.10 +0.6
5,987,423 + Pf6N2E2_5192 0.26 +0.6
5,987,423 + Pf6N2E2_5192 0.26 -0.4
5,987,423 + Pf6N2E2_5192 0.26 -0.3
5,987,423 + Pf6N2E2_5192 0.26 -1.0
5,987,424 - Pf6N2E2_5192 0.26 -0.4
5,987,424 - Pf6N2E2_5192 0.26 +0.6
5,987,453 + Pf6N2E2_5192 0.28 +0.6
5,987,453 + Pf6N2E2_5192 0.28 -0.4
5,987,453 + Pf6N2E2_5192 0.28 -1.7
5,987,453 + Pf6N2E2_5192 0.28 +0.6
5,987,453 + Pf6N2E2_5192 0.28 +0.6
5,987,454 - Pf6N2E2_5192 0.28 -0.0
5,987,454 - Pf6N2E2_5192 0.28 -0.4
5,987,657 + Pf6N2E2_5192 0.46 -0.2
5,987,657 + Pf6N2E2_5192 0.46 -2.4
5,987,657 + Pf6N2E2_5192 0.46 -1.2
5,987,658 - Pf6N2E2_5192 0.46 +0.6
5,987,658 - Pf6N2E2_5192 0.46 +0.6
5,987,658 - Pf6N2E2_5192 0.46 +0.6
5,987,658 - Pf6N2E2_5192 0.46 +0.6
5,987,661 + Pf6N2E2_5192 0.46 +0.6
5,987,661 + Pf6N2E2_5192 0.46 -0.8
5,987,661 + Pf6N2E2_5192 0.46 +0.6
5,987,661 + Pf6N2E2_5192 0.46 -0.6
5,987,661 + Pf6N2E2_5192 0.46 -0.4
5,987,661 + Pf6N2E2_5192 0.46 -0.4
5,987,661 + Pf6N2E2_5192 0.46 -1.0
5,987,662 - Pf6N2E2_5192 0.46 +0.6
5,987,662 - Pf6N2E2_5192 0.46 -0.4
5,987,662 - Pf6N2E2_5192 0.46 -2.0
5,987,662 - Pf6N2E2_5192 0.46 -1.0
5,987,662 - Pf6N2E2_5192 0.46 -0.4
5,987,662 - Pf6N2E2_5192 0.46 +0.6
5,987,662 - Pf6N2E2_5192 0.46 +0.6
5,987,662 - Pf6N2E2_5192 0.46 +0.6
5,987,663 + Pf6N2E2_5192 0.46 -0.7
5,987,663 + Pf6N2E2_5192 0.46 -1.0
5,987,663 + Pf6N2E2_5192 0.46 -0.4
5,987,663 + Pf6N2E2_5192 0.46 -0.4
5,987,663 + Pf6N2E2_5192 0.46 -2.5
5,987,664 - Pf6N2E2_5192 0.46 +0.6
5,987,664 - Pf6N2E2_5192 0.46 -0.6
5,987,732 + Pf6N2E2_5192 0.52 -0.3
5,987,733 - Pf6N2E2_5192 0.52 -0.5
5,987,810 + Pf6N2E2_5192 0.59 +0.6
5,987,811 - Pf6N2E2_5192 0.59 -1.3
5,987,834 + Pf6N2E2_5192 0.61 -1.7
5,987,835 - Pf6N2E2_5192 0.61 -0.2
5,987,906 + Pf6N2E2_5192 0.67 +0.6
5,987,914 - Pf6N2E2_5192 0.68 -0.4
5,987,914 - Pf6N2E2_5192 0.68 +0.6
5,987,914 - Pf6N2E2_5192 0.68 +0.6
5,987,914 - Pf6N2E2_5192 0.68 +0.6
5,987,914 - Pf6N2E2_5192 0.68 -1.2
5,987,914 - Pf6N2E2_5192 0.68 +0.6
5,987,915 + Pf6N2E2_5192 0.68 -0.4
5,987,915 + Pf6N2E2_5192 0.68 -0.8
5,987,915 + Pf6N2E2_5192 0.68 -0.6
5,987,916 - Pf6N2E2_5192 0.68 +0.6
5,987,916 - Pf6N2E2_5192 0.68 -0.1

Or see this region's nucleotide sequence