Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5058 and Pf6N2E2_5059 are separated by 103 nucleotides Pf6N2E2_5059 and Pf6N2E2_5060 are separated by 57 nucleotides Pf6N2E2_5060 and Pf6N2E2_5061 are separated by 319 nucleotides
Pf6N2E2_5058 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,832,424 to 5,834,325
_5058
Pf6N2E2_5059 - Transcriptional regulator, TetR family, at 5,834,429 to 5,835,106
_5059
Pf6N2E2_5060 - hypothetical protein, at 5,835,164 to 5,836,111
_5060
Pf6N2E2_5061 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 5,836,431 to 5,837,288
_5061
Position (kb) 5835
5836
5837 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 5834.179 kb on + strand at 5834.180 kb on - strand at 5834.180 kb on - strand at 5834.180 kb on - strand at 5834.236 kb on + strand at 5834.335 kb on - strand at 5834.434 kb on + strand at 5834.434 kb on + strand at 5834.435 kb on - strand at 5834.624 kb on + strand, within Pf6N2E2_5059 at 5834.624 kb on + strand, within Pf6N2E2_5059 at 5834.624 kb on + strand, within Pf6N2E2_5059 at 5834.624 kb on + strand, within Pf6N2E2_5059 at 5834.624 kb on + strand, within Pf6N2E2_5059 at 5834.625 kb on - strand, within Pf6N2E2_5059 at 5834.625 kb on - strand, within Pf6N2E2_5059 at 5834.625 kb on - strand, within Pf6N2E2_5059 at 5834.625 kb on - strand, within Pf6N2E2_5059 at 5834.627 kb on + strand, within Pf6N2E2_5059 at 5834.627 kb on + strand, within Pf6N2E2_5059 at 5834.627 kb on + strand, within Pf6N2E2_5059 at 5834.627 kb on + strand, within Pf6N2E2_5059 at 5834.628 kb on - strand, within Pf6N2E2_5059 at 5834.630 kb on + strand, within Pf6N2E2_5059 at 5834.630 kb on + strand, within Pf6N2E2_5059 at 5834.630 kb on + strand, within Pf6N2E2_5059 at 5834.630 kb on + strand, within Pf6N2E2_5059 at 5834.631 kb on - strand, within Pf6N2E2_5059 at 5834.631 kb on - strand, within Pf6N2E2_5059 at 5834.631 kb on - strand, within Pf6N2E2_5059 at 5834.631 kb on - strand, within Pf6N2E2_5059 at 5834.654 kb on + strand, within Pf6N2E2_5059 at 5834.655 kb on - strand, within Pf6N2E2_5059 at 5834.655 kb on - strand, within Pf6N2E2_5059 at 5834.655 kb on - strand, within Pf6N2E2_5059 at 5834.678 kb on + strand, within Pf6N2E2_5059 at 5834.678 kb on + strand, within Pf6N2E2_5059 at 5834.834 kb on + strand, within Pf6N2E2_5059 at 5834.834 kb on + strand, within Pf6N2E2_5059 at 5834.835 kb on - strand, within Pf6N2E2_5059 at 5834.835 kb on - strand, within Pf6N2E2_5059 at 5834.873 kb on - strand, within Pf6N2E2_5059 at 5835.092 kb on + strand at 5835.093 kb on - strand at 5835.096 kb on + strand at 5835.097 kb on - strand at 5835.097 kb on - strand at 5835.097 kb on - strand at 5835.146 kb on - strand at 5835.146 kb on - strand at 5835.146 kb on - strand at 5835.146 kb on - strand at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.307 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.312 kb on + strand at 5836.402 kb on + strand at 5836.402 kb on + strand at 5836.402 kb on + strand at 5836.419 kb on + strand at 5836.600 kb on + strand, within Pf6N2E2_5061 at 5836.601 kb on - strand, within Pf6N2E2_5061 at 5836.601 kb on - strand, within Pf6N2E2_5061
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 5,834,179 + +0.6 5,834,180 - -0.4 5,834,180 - -0.0 5,834,180 - +0.6 5,834,236 + -1.4 5,834,335 - +0.6 5,834,434 + -0.4 5,834,434 + +0.6 5,834,435 - +0.6 5,834,624 + Pf6N2E2_5059 0.29 +9.3 5,834,624 + Pf6N2E2_5059 0.29 +0.6 5,834,624 + Pf6N2E2_5059 0.29 -1.4 5,834,624 + Pf6N2E2_5059 0.29 +9.3 5,834,624 + Pf6N2E2_5059 0.29 -1.0 5,834,625 - Pf6N2E2_5059 0.29 +9.6 5,834,625 - Pf6N2E2_5059 0.29 -1.4 5,834,625 - Pf6N2E2_5059 0.29 +0.6 5,834,625 - Pf6N2E2_5059 0.29 +0.6 5,834,627 + Pf6N2E2_5059 0.29 +0.6 5,834,627 + Pf6N2E2_5059 0.29 +8.1 5,834,627 + Pf6N2E2_5059 0.29 +0.6 5,834,627 + Pf6N2E2_5059 0.29 +0.6 5,834,628 - Pf6N2E2_5059 0.29 +10.2 5,834,630 + Pf6N2E2_5059 0.30 +0.6 5,834,630 + Pf6N2E2_5059 0.30 +9.3 5,834,630 + Pf6N2E2_5059 0.30 +9.3 5,834,630 + Pf6N2E2_5059 0.30 +7.9 5,834,631 - Pf6N2E2_5059 0.30 -0.4 5,834,631 - Pf6N2E2_5059 0.30 -0.4 5,834,631 - Pf6N2E2_5059 0.30 +0.6 5,834,631 - Pf6N2E2_5059 0.30 +0.6 5,834,654 + Pf6N2E2_5059 0.33 +9.5 5,834,655 - Pf6N2E2_5059 0.33 +0.6 5,834,655 - Pf6N2E2_5059 0.33 +0.6 5,834,655 - Pf6N2E2_5059 0.33 -0.4 5,834,678 + Pf6N2E2_5059 0.37 +0.6 5,834,678 + Pf6N2E2_5059 0.37 +9.4 5,834,834 + Pf6N2E2_5059 0.60 +9.5 5,834,834 + Pf6N2E2_5059 0.60 +8.5 5,834,835 - Pf6N2E2_5059 0.60 -2.0 5,834,835 - Pf6N2E2_5059 0.60 +9.4 5,834,873 - Pf6N2E2_5059 0.65 +9.2 5,835,092 + +7.0 5,835,093 - +9.3 5,835,096 + -1.0 5,835,097 - +0.6 5,835,097 - +0.6 5,835,097 - +8.3 5,835,146 - +0.6 5,835,146 - +0.0 5,835,146 - -1.4 5,835,146 - +0.6 5,836,307 + -1.7 5,836,307 + -1.7 5,836,307 + -1.0 5,836,307 + -0.4 5,836,312 + -0.3 5,836,312 + -0.6 5,836,312 + +0.6 5,836,312 + -0.4 5,836,312 + -1.0 5,836,312 + +0.0 5,836,402 + -0.5 5,836,402 + +0.1 5,836,402 + +0.6 5,836,419 + +0.6 5,836,600 + Pf6N2E2_5061 0.20 +0.6 5,836,601 - Pf6N2E2_5061 0.20 +0.6 5,836,601 - Pf6N2E2_5061 0.20 -0.7
Or see this region's nucleotide sequence