Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5055 and Pf6N2E2_5056 are separated by 167 nucleotides Pf6N2E2_5056 and Pf6N2E2_5057 are separated by 61 nucleotides Pf6N2E2_5057 and Pf6N2E2_5058 are separated by 36 nucleotides
Pf6N2E2_5055 - membrane protein, putative, at 5,829,769 to 5,830,647
_5055
Pf6N2E2_5056 - Hexuronate transporter, at 5,830,815 to 5,832,152
_5056
Pf6N2E2_5057 - hypothetical protein, at 5,832,214 to 5,832,387
_5057
Pf6N2E2_5058 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,832,424 to 5,834,325
_5058
Position (kb) 5830
5831
5832
5833 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5829.826 kb on - strand at 5829.866 kb on + strand, within Pf6N2E2_5055 at 5829.866 kb on + strand, within Pf6N2E2_5055 at 5829.874 kb on + strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.875 kb on - strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.919 kb on + strand, within Pf6N2E2_5055 at 5829.920 kb on - strand, within Pf6N2E2_5055 at 5829.920 kb on - strand, within Pf6N2E2_5055 at 5829.980 kb on + strand, within Pf6N2E2_5055 at 5829.981 kb on - strand, within Pf6N2E2_5055 at 5829.981 kb on - strand, within Pf6N2E2_5055 at 5829.984 kb on + strand, within Pf6N2E2_5055 at 5829.985 kb on - strand, within Pf6N2E2_5055 at 5829.985 kb on - strand, within Pf6N2E2_5055 at 5829.985 kb on - strand, within Pf6N2E2_5055 at 5830.189 kb on - strand, within Pf6N2E2_5055 at 5830.279 kb on + strand, within Pf6N2E2_5055 at 5830.279 kb on + strand, within Pf6N2E2_5055 at 5830.279 kb on + strand, within Pf6N2E2_5055 at 5830.279 kb on + strand, within Pf6N2E2_5055 at 5830.280 kb on - strand, within Pf6N2E2_5055 at 5830.280 kb on - strand, within Pf6N2E2_5055 at 5830.280 kb on - strand, within Pf6N2E2_5055 at 5830.280 kb on - strand, within Pf6N2E2_5055 at 5830.280 kb on - strand, within Pf6N2E2_5055 at 5830.282 kb on - strand, within Pf6N2E2_5055 at 5830.855 kb on + strand at 5830.855 kb on + strand at 5830.855 kb on + strand at 5830.855 kb on + strand at 5830.856 kb on - strand at 5830.856 kb on - strand at 5830.856 kb on - strand at 5830.856 kb on - strand at 5830.879 kb on + strand at 5830.879 kb on + strand at 5830.879 kb on + strand at 5830.880 kb on - strand at 5830.880 kb on - strand at 5830.912 kb on + strand at 5830.912 kb on + strand at 5830.912 kb on + strand at 5830.913 kb on - strand at 5830.913 kb on - strand at 5830.913 kb on - strand at 5830.913 kb on - strand at 5830.913 kb on - strand at 5830.913 kb on - strand at 5830.916 kb on + strand at 5830.916 kb on + strand at 5830.916 kb on + strand at 5830.916 kb on + strand at 5830.916 kb on + strand at 5830.917 kb on - strand at 5831.029 kb on + strand, within Pf6N2E2_5056 at 5831.029 kb on + strand, within Pf6N2E2_5056 at 5831.030 kb on - strand, within Pf6N2E2_5056 at 5831.030 kb on - strand, within Pf6N2E2_5056 at 5831.030 kb on - strand, within Pf6N2E2_5056 at 5831.266 kb on + strand, within Pf6N2E2_5056 at 5831.317 kb on + strand, within Pf6N2E2_5056 at 5831.317 kb on + strand, within Pf6N2E2_5056 at 5831.317 kb on + strand, within Pf6N2E2_5056 at 5831.318 kb on - strand, within Pf6N2E2_5056 at 5831.318 kb on - strand, within Pf6N2E2_5056 at 5831.318 kb on - strand, within Pf6N2E2_5056 at 5831.347 kb on + strand, within Pf6N2E2_5056 at 5831.348 kb on - strand, within Pf6N2E2_5056 at 5831.348 kb on - strand, within Pf6N2E2_5056 at 5831.348 kb on - strand, within Pf6N2E2_5056 at 5831.353 kb on + strand, within Pf6N2E2_5056 at 5831.353 kb on + strand, within Pf6N2E2_5056 at 5831.353 kb on + strand, within Pf6N2E2_5056 at 5831.353 kb on + strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.354 kb on - strand, within Pf6N2E2_5056 at 5831.473 kb on + strand, within Pf6N2E2_5056 at 5831.473 kb on + strand, within Pf6N2E2_5056 at 5831.473 kb on + strand, within Pf6N2E2_5056 at 5831.474 kb on - strand, within Pf6N2E2_5056 at 5831.474 kb on - strand, within Pf6N2E2_5056 at 5831.521 kb on + strand, within Pf6N2E2_5056 at 5831.522 kb on - strand, within Pf6N2E2_5056 at 5831.663 kb on + strand, within Pf6N2E2_5056 at 5831.664 kb on - strand, within Pf6N2E2_5056 at 5831.868 kb on + strand, within Pf6N2E2_5056 at 5831.869 kb on - strand, within Pf6N2E2_5056 at 5831.936 kb on - strand, within Pf6N2E2_5056 at 5832.007 kb on + strand, within Pf6N2E2_5056 at 5832.007 kb on + strand, within Pf6N2E2_5056 at 5832.007 kb on + strand, within Pf6N2E2_5056 at 5832.007 kb on + strand, within Pf6N2E2_5056 at 5832.008 kb on - strand, within Pf6N2E2_5056 at 5832.008 kb on - strand, within Pf6N2E2_5056 at 5832.008 kb on - strand, within Pf6N2E2_5056 at 5832.152 kb on + strand at 5832.152 kb on + strand at 5832.152 kb on + strand at 5832.152 kb on + strand at 5832.153 kb on - strand at 5832.178 kb on + strand at 5832.178 kb on + strand at 5832.178 kb on + strand at 5832.178 kb on + strand at 5832.178 kb on + strand at 5832.179 kb on - strand at 5832.321 kb on + strand, within Pf6N2E2_5057 at 5832.321 kb on + strand, within Pf6N2E2_5057 at 5832.322 kb on - strand, within Pf6N2E2_5057 at 5832.325 kb on + strand, within Pf6N2E2_5057 at 5832.325 kb on + strand, within Pf6N2E2_5057 at 5832.326 kb on - strand, within Pf6N2E2_5057 at 5832.329 kb on - strand, within Pf6N2E2_5057 at 5832.535 kb on + strand at 5832.535 kb on + strand at 5832.535 kb on + strand at 5832.535 kb on + strand at 5832.538 kb on + strand at 5832.538 kb on + strand at 5832.539 kb on - strand at 5832.814 kb on - strand, within Pf6N2E2_5058 at 5832.814 kb on - strand, within Pf6N2E2_5058 at 5832.852 kb on + strand, within Pf6N2E2_5058 at 5832.852 kb on + strand, within Pf6N2E2_5058 at 5832.853 kb on - strand, within Pf6N2E2_5058 at 5832.853 kb on - strand, within Pf6N2E2_5058 at 5832.853 kb on - strand, within Pf6N2E2_5058 at 5832.853 kb on - strand, within Pf6N2E2_5058 at 5832.856 kb on + strand, within Pf6N2E2_5058 at 5832.856 kb on + strand, within Pf6N2E2_5058 at 5832.856 kb on + strand, within Pf6N2E2_5058 at 5832.856 kb on + strand, within Pf6N2E2_5058 at 5832.857 kb on - strand, within Pf6N2E2_5058 at 5832.857 kb on - strand, within Pf6N2E2_5058 at 5832.857 kb on - strand, within Pf6N2E2_5058 at 5832.857 kb on - strand, within Pf6N2E2_5058
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 5,829,826 - +0.6 5,829,866 + Pf6N2E2_5055 0.11 -0.7 5,829,866 + Pf6N2E2_5055 0.11 -0.4 5,829,874 + Pf6N2E2_5055 0.12 +0.6 5,829,875 - Pf6N2E2_5055 0.12 +0.6 5,829,875 - Pf6N2E2_5055 0.12 +0.6 5,829,875 - Pf6N2E2_5055 0.12 -0.4 5,829,875 - Pf6N2E2_5055 0.12 +0.6 5,829,875 - Pf6N2E2_5055 0.12 +0.6 5,829,875 - Pf6N2E2_5055 0.12 -0.4 5,829,919 + Pf6N2E2_5055 0.17 -1.0 5,829,919 + Pf6N2E2_5055 0.17 +0.6 5,829,919 + Pf6N2E2_5055 0.17 -1.4 5,829,919 + Pf6N2E2_5055 0.17 -1.0 5,829,919 + Pf6N2E2_5055 0.17 +0.6 5,829,919 + Pf6N2E2_5055 0.17 +0.6 5,829,920 - Pf6N2E2_5055 0.17 +0.6 5,829,920 - Pf6N2E2_5055 0.17 -0.4 5,829,980 + Pf6N2E2_5055 0.24 -0.6 5,829,981 - Pf6N2E2_5055 0.24 -0.4 5,829,981 - Pf6N2E2_5055 0.24 +0.6 5,829,984 + Pf6N2E2_5055 0.24 -1.3 5,829,985 - Pf6N2E2_5055 0.25 +0.6 5,829,985 - Pf6N2E2_5055 0.25 +0.6 5,829,985 - Pf6N2E2_5055 0.25 -1.0 5,830,189 - Pf6N2E2_5055 0.48 +0.6 5,830,279 + Pf6N2E2_5055 0.58 +0.6 5,830,279 + Pf6N2E2_5055 0.58 +0.6 5,830,279 + Pf6N2E2_5055 0.58 +0.6 5,830,279 + Pf6N2E2_5055 0.58 +0.6 5,830,280 - Pf6N2E2_5055 0.58 -1.0 5,830,280 - Pf6N2E2_5055 0.58 -1.4 5,830,280 - Pf6N2E2_5055 0.58 +0.1 5,830,280 - Pf6N2E2_5055 0.58 +0.6 5,830,280 - Pf6N2E2_5055 0.58 +0.6 5,830,282 - Pf6N2E2_5055 0.58 +0.4 5,830,855 + -0.8 5,830,855 + -0.9 5,830,855 + -0.4 5,830,855 + -1.0 5,830,856 - -1.0 5,830,856 - +0.6 5,830,856 - -0.4 5,830,856 - -1.8 5,830,879 + -0.4 5,830,879 + -1.1 5,830,879 + +0.6 5,830,880 - -0.4 5,830,880 - -1.2 5,830,912 + -0.6 5,830,912 + +0.8 5,830,912 + -0.4 5,830,913 - -2.1 5,830,913 - +0.6 5,830,913 - +0.6 5,830,913 - +0.6 5,830,913 - -0.9 5,830,913 - +0.6 5,830,916 + +0.6 5,830,916 + +0.6 5,830,916 + +0.6 5,830,916 + -0.7 5,830,916 + -0.4 5,830,917 - +0.6 5,831,029 + Pf6N2E2_5056 0.16 +0.6 5,831,029 + Pf6N2E2_5056 0.16 -0.6 5,831,030 - Pf6N2E2_5056 0.16 +0.6 5,831,030 - Pf6N2E2_5056 0.16 +0.6 5,831,030 - Pf6N2E2_5056 0.16 +0.6 5,831,266 + Pf6N2E2_5056 0.34 -2.0 5,831,317 + Pf6N2E2_5056 0.38 +0.6 5,831,317 + Pf6N2E2_5056 0.38 +0.2 5,831,317 + Pf6N2E2_5056 0.38 -1.0 5,831,318 - Pf6N2E2_5056 0.38 +0.6 5,831,318 - Pf6N2E2_5056 0.38 -1.0 5,831,318 - Pf6N2E2_5056 0.38 +0.6 5,831,347 + Pf6N2E2_5056 0.40 -0.4 5,831,348 - Pf6N2E2_5056 0.40 -0.4 5,831,348 - Pf6N2E2_5056 0.40 -1.6 5,831,348 - Pf6N2E2_5056 0.40 -0.4 5,831,353 + Pf6N2E2_5056 0.40 -0.4 5,831,353 + Pf6N2E2_5056 0.40 -1.0 5,831,353 + Pf6N2E2_5056 0.40 +0.6 5,831,353 + Pf6N2E2_5056 0.40 -1.4 5,831,354 - Pf6N2E2_5056 0.40 -2.0 5,831,354 - Pf6N2E2_5056 0.40 +0.6 5,831,354 - Pf6N2E2_5056 0.40 +0.6 5,831,354 - Pf6N2E2_5056 0.40 -1.1 5,831,354 - Pf6N2E2_5056 0.40 -0.4 5,831,354 - Pf6N2E2_5056 0.40 -1.5 5,831,473 + Pf6N2E2_5056 0.49 +0.6 5,831,473 + Pf6N2E2_5056 0.49 -1.0 5,831,473 + Pf6N2E2_5056 0.49 -0.4 5,831,474 - Pf6N2E2_5056 0.49 +0.6 5,831,474 - Pf6N2E2_5056 0.49 +1.6 5,831,521 + Pf6N2E2_5056 0.53 -1.0 5,831,522 - Pf6N2E2_5056 0.53 -0.4 5,831,663 + Pf6N2E2_5056 0.63 -1.1 5,831,664 - Pf6N2E2_5056 0.63 -0.4 5,831,868 + Pf6N2E2_5056 0.79 +0.6 5,831,869 - Pf6N2E2_5056 0.79 +0.6 5,831,936 - Pf6N2E2_5056 0.84 -0.9 5,832,007 + Pf6N2E2_5056 0.89 +0.6 5,832,007 + Pf6N2E2_5056 0.89 +0.6 5,832,007 + Pf6N2E2_5056 0.89 -0.2 5,832,007 + Pf6N2E2_5056 0.89 -0.4 5,832,008 - Pf6N2E2_5056 0.89 -1.0 5,832,008 - Pf6N2E2_5056 0.89 -0.7 5,832,008 - Pf6N2E2_5056 0.89 -1.0 5,832,152 + -0.4 5,832,152 + +0.6 5,832,152 + +0.6 5,832,152 + +0.6 5,832,153 - -0.4 5,832,178 + +0.6 5,832,178 + -0.4 5,832,178 + -0.4 5,832,178 + +0.6 5,832,178 + -1.0 5,832,179 - -1.3 5,832,321 + Pf6N2E2_5057 0.61 +4.2 5,832,321 + Pf6N2E2_5057 0.61 +2.9 5,832,322 - Pf6N2E2_5057 0.62 +0.6 5,832,325 + Pf6N2E2_5057 0.64 +0.6 5,832,325 + Pf6N2E2_5057 0.64 +0.6 5,832,326 - Pf6N2E2_5057 0.64 -1.0 5,832,329 - Pf6N2E2_5057 0.66 -1.0 5,832,535 + -0.6 5,832,535 + -0.9 5,832,535 + +0.6 5,832,535 + +0.6 5,832,538 + +0.1 5,832,538 + +0.6 5,832,539 - +1.6 5,832,814 - Pf6N2E2_5058 0.21 +0.6 5,832,814 - Pf6N2E2_5058 0.21 +0.6 5,832,852 + Pf6N2E2_5058 0.23 +0.6 5,832,852 + Pf6N2E2_5058 0.23 -0.3 5,832,853 - Pf6N2E2_5058 0.23 +0.6 5,832,853 - Pf6N2E2_5058 0.23 +0.6 5,832,853 - Pf6N2E2_5058 0.23 +0.6 5,832,853 - Pf6N2E2_5058 0.23 -0.4 5,832,856 + Pf6N2E2_5058 0.23 +0.6 5,832,856 + Pf6N2E2_5058 0.23 +0.6 5,832,856 + Pf6N2E2_5058 0.23 -0.4 5,832,856 + Pf6N2E2_5058 0.23 +0.6 5,832,857 - Pf6N2E2_5058 0.23 -1.4 5,832,857 - Pf6N2E2_5058 0.23 +0.6 5,832,857 - Pf6N2E2_5058 0.23 +0.6 5,832,857 - Pf6N2E2_5058 0.23 +0.6
Or see this region's nucleotide sequence