Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3441

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
4,009,274	+				+0.7
4,009,369	+				+0.7
4,009,369	+				+0.7
4,009,370	-				+0.7
4,009,541	+		Pf6N2E2_3440	0.19	-0.1
4,009,541	+		Pf6N2E2_3440	0.19	-0.7
4,009,541	+		Pf6N2E2_3440	0.19	+0.1
4,009,542	-		Pf6N2E2_3440	0.19	-2.3
4,009,542	-		Pf6N2E2_3440	0.19	+0.7
4,009,641	-		Pf6N2E2_3440	0.31	-1.7
4,009,793	-		Pf6N2E2_3440	0.48	-0.2
4,009,793	-		Pf6N2E2_3440	0.48	+0.7
4,009,962	-		Pf6N2E2_3440	0.68	-1.6
4,010,152	+		Pf6N2E2_3440	0.90	+0.7
4,010,226	-				-0.7
4,010,248	+				-0.9
4,010,248	+				-0.3
4,010,249	-				-0.3
4,010,249	-				+0.7
4,010,364	+				+0.7
4,010,365	-				+0.7
4,010,372	+				-0.3
4,010,372	+				-0.3
4,010,674	+		Pf6N2E2_3441	0.30	-0.9
4,010,675	-		Pf6N2E2_3441	0.30	-0.9
4,010,675	-		Pf6N2E2_3441	0.30	+0.7
4,010,675	-		Pf6N2E2_3441	0.30	+0.7
4,011,017	+		Pf6N2E2_3441	0.56	+0.7
4,011,065	+		Pf6N2E2_3441	0.59	-0.3
4,011,065	+		Pf6N2E2_3441	0.59	-0.3
4,011,447	-		Pf6N2E2_3441	0.87	+0.7
4,011,447	-		Pf6N2E2_3441	0.87	-0.3
4,011,447	-		Pf6N2E2_3441	0.87	-2.2
4,011,447	-		Pf6N2E2_3441	0.87	-0.9
4,011,620	+				-0.3
4,011,621	-				-0.2
4,011,621	-				-0.6
4,011,661	+				-0.0
4,011,701	-				+0.7
4,011,944	+				-0.3
4,011,944	+				+0.7
4,011,945	-				-0.6
4,011,945	-				-0.5
4,012,038	+				-1.7
4,012,039	-				-0.9
4,012,039	-				+0.1
4,012,190	+		Pf6N2E2_3443	0.17	-2.3
4,012,190	+		Pf6N2E2_3443	0.17	+0.7
4,012,191	-		Pf6N2E2_3443	0.17	-0.3
4,012,382	+		Pf6N2E2_3443	0.30	-0.3
4,012,382	+		Pf6N2E2_3443	0.30	-0.8
4,012,383	-		Pf6N2E2_3443	0.30	-0.3
4,012,383	-		Pf6N2E2_3443	0.30	+0.7
4,012,431	+		Pf6N2E2_3443	0.33	+0.7
4,012,497	-		Pf6N2E2_3443	0.38	+0.7