Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_199

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_196 and Pf6N2E2_197 overlap by 4 nucleotidesPf6N2E2_197 and Pf6N2E2_198 are separated by 106 nucleotidesPf6N2E2_198 and Pf6N2E2_199 are separated by 9 nucleotidesPf6N2E2_199 and Pf6N2E2_200 are separated by 60 nucleotides Pf6N2E2_196 - hypothetical protein, at 249,721 to 249,948 _196 Pf6N2E2_197 - Death on curing protein, Doc toxin, at 249,945 to 250,262 _197 Pf6N2E2_198 - hypothetical protein, at 250,369 to 250,527 _198 Pf6N2E2_199 - hypothetical protein, at 250,537 to 250,800 _199 Pf6N2E2_200 - Possible glycosyltransferase, at 250,861 to 251,967 _200 Position (kb) 250 251Strain fitness (log2 ratio) -2 -1 0 1at 249.566 kb on + strandat 249.566 kb on + strandat 249.567 kb on - strandat 249.567 kb on - strandat 249.576 kb on + strandat 249.576 kb on + strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.577 kb on - strandat 249.677 kb on - strandat 249.717 kb on + strandat 249.717 kb on + strandat 249.803 kb on - strand, within Pf6N2E2_196at 249.991 kb on + strand, within Pf6N2E2_197at 249.991 kb on + strand, within Pf6N2E2_197at 249.991 kb on + strand, within Pf6N2E2_197at 249.992 kb on - strand, within Pf6N2E2_197at 250.008 kb on + strand, within Pf6N2E2_197at 250.009 kb on - strand, within Pf6N2E2_197at 250.009 kb on - strand, within Pf6N2E2_197at 250.012 kb on - strand, within Pf6N2E2_197at 250.012 kb on - strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.071 kb on + strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.072 kb on - strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.073 kb on + strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.074 kb on - strand, within Pf6N2E2_197at 250.103 kb on + strand, within Pf6N2E2_197at 250.104 kb on - strand, within Pf6N2E2_197at 250.114 kb on - strand, within Pf6N2E2_197at 250.171 kb on - strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.182 kb on + strand, within Pf6N2E2_197at 250.211 kb on - strand, within Pf6N2E2_197at 250.429 kb on + strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.430 kb on - strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.455 kb on + strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.456 kb on - strand, within Pf6N2E2_198at 250.480 kb on + strand, within Pf6N2E2_198at 250.748 kb on + strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.749 kb on - strand, within Pf6N2E2_199at 250.777 kb on + strandat 250.778 kb on - strandat 250.787 kb on + strandat 250.787 kb on + strandat 250.809 kb on + strandat 250.810 kb on - strandat 250.843 kb on + strandat 251.087 kb on + strand, within Pf6N2E2_200at 251.088 kb on - strand, within Pf6N2E2_200at 251.222 kb on - strand, within Pf6N2E2_200at 251.222 kb on - strand, within Pf6N2E2_200at 251.422 kb on + strand, within Pf6N2E2_200at 251.423 kb on - strand, within Pf6N2E2_200at 251.476 kb on + strand, within Pf6N2E2_200at 251.476 kb on + strand, within Pf6N2E2_200at 251.477 kb on - strand, within Pf6N2E2_200at 251.544 kb on - strand, within Pf6N2E2_200at 251.574 kb on - strand, within Pf6N2E2_200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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249,566 + +0.5
249,566 + -0.7
249,567 - -0.5
249,567 - -0.6
249,576 + +0.5
249,576 + +0.5
249,577 - -0.6
249,577 - +0.5
249,577 - -0.3
249,577 - -0.5
249,577 - -0.3
249,577 - +0.5
249,577 - +0.5
249,677 - +0.5
249,717 + +0.5
249,717 + -0.1
249,803 - Pf6N2E2_196 0.36 +0.5
249,991 + Pf6N2E2_197 0.14 -0.5
249,991 + Pf6N2E2_197 0.14 -1.5
249,991 + Pf6N2E2_197 0.14 -1.8
249,992 - Pf6N2E2_197 0.15 -0.5
250,008 + Pf6N2E2_197 0.20 +0.5
250,009 - Pf6N2E2_197 0.20 +0.5
250,009 - Pf6N2E2_197 0.20 -1.1
250,012 - Pf6N2E2_197 0.21 -1.1
250,012 - Pf6N2E2_197 0.21 -0.5
250,071 + Pf6N2E2_197 0.40 -1.3
250,071 + Pf6N2E2_197 0.40 -0.5
250,071 + Pf6N2E2_197 0.40 +0.5
250,071 + Pf6N2E2_197 0.40 +0.5
250,072 - Pf6N2E2_197 0.40 +0.5
250,072 - Pf6N2E2_197 0.40 +0.5
250,072 - Pf6N2E2_197 0.40 -1.1
250,073 + Pf6N2E2_197 0.40 -1.1
250,073 + Pf6N2E2_197 0.40 +0.5
250,073 + Pf6N2E2_197 0.40 +0.5
250,073 + Pf6N2E2_197 0.40 -1.5
250,073 + Pf6N2E2_197 0.40 +0.5
250,074 - Pf6N2E2_197 0.41 +0.5
250,074 - Pf6N2E2_197 0.41 -0.5
250,074 - Pf6N2E2_197 0.41 +0.5
250,074 - Pf6N2E2_197 0.41 -1.1
250,074 - Pf6N2E2_197 0.41 +0.5
250,103 + Pf6N2E2_197 0.50 -0.5
250,104 - Pf6N2E2_197 0.50 -0.5
250,114 - Pf6N2E2_197 0.53 -0.5
250,171 - Pf6N2E2_197 0.71 +0.5
250,182 + Pf6N2E2_197 0.75 -0.5
250,182 + Pf6N2E2_197 0.75 -0.1
250,182 + Pf6N2E2_197 0.75 -0.5
250,182 + Pf6N2E2_197 0.75 -0.5
250,211 - Pf6N2E2_197 0.84 -0.5
250,429 + Pf6N2E2_198 0.38 -0.5
250,430 - Pf6N2E2_198 0.38 -0.5
250,430 - Pf6N2E2_198 0.38 -0.5
250,430 - Pf6N2E2_198 0.38 -2.1
250,455 + Pf6N2E2_198 0.54 +0.5
250,455 + Pf6N2E2_198 0.54 +0.5
250,455 + Pf6N2E2_198 0.54 -0.7
250,456 - Pf6N2E2_198 0.55 +0.5
250,456 - Pf6N2E2_198 0.55 +0.5
250,456 - Pf6N2E2_198 0.55 -0.7
250,480 + Pf6N2E2_198 0.70 +0.5
250,748 + Pf6N2E2_199 0.80 +0.5
250,749 - Pf6N2E2_199 0.80 -1.1
250,749 - Pf6N2E2_199 0.80 -0.5
250,749 - Pf6N2E2_199 0.80 -1.4
250,777 + -1.1
250,778 - +0.5
250,787 + +0.5
250,787 + -1.3
250,809 + -0.5
250,810 - +0.5
250,843 + -0.5
251,087 + Pf6N2E2_200 0.20 -1.0
251,088 - Pf6N2E2_200 0.21 -1.1
251,222 - Pf6N2E2_200 0.33 +0.5
251,222 - Pf6N2E2_200 0.33 +0.5
251,422 + Pf6N2E2_200 0.51 -1.0
251,423 - Pf6N2E2_200 0.51 +0.5
251,476 + Pf6N2E2_200 0.56 -1.1
251,476 + Pf6N2E2_200 0.56 +0.5
251,477 - Pf6N2E2_200 0.56 -0.5
251,544 - Pf6N2E2_200 0.62 +0.0
251,574 - Pf6N2E2_200 0.64 +0.5

Or see this region's nucleotide sequence