Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27835

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
6,193,915	+				+3.2
6,193,915	+				+0.6
6,193,968	+				+2.3
6,194,117	-				+1.5
6,194,141	+				+0.7
6,194,142	-				+0.1
6,194,150	+				+0.5
6,194,150	+				+1.6
6,194,150	+				+0.7
6,194,150	+				-0.2
6,194,330	+		PFLU_RS27830	0.33	+1.5
6,194,330	+		PFLU_RS27830	0.33	-1.8
6,194,330	+		PFLU_RS27830	0.33	+1.3
6,194,330	+		PFLU_RS27830	0.33	+2.7
6,194,330	+		PFLU_RS27830	0.33	+1.9
6,194,331	-		PFLU_RS27830	0.33	+2.2
6,194,331	-		PFLU_RS27830	0.33	+1.4
6,194,331	-		PFLU_RS27830	0.33	-0.9
6,194,331	-		PFLU_RS27830	0.33	+2.9
6,194,353	+		PFLU_RS27830	0.36	+1.0
6,194,353	+		PFLU_RS27830	0.36	+2.8
6,194,353	+		PFLU_RS27830	0.36	+0.8
6,194,354	-		PFLU_RS27830	0.36	-2.1
6,194,354	-		PFLU_RS27830	0.36	+0.0
6,194,354	-		PFLU_RS27830	0.36	+2.2
6,194,354	-		PFLU_RS27830	0.36	+1.2
6,194,354	-		PFLU_RS27830	0.36	+2.7
6,194,374	+		PFLU_RS27830	0.39	+1.0
6,194,374	+		PFLU_RS27830	0.39	+1.7
6,194,374	+		PFLU_RS27830	0.39	-0.4
6,194,374	+		PFLU_RS27830	0.39	-1.3
6,194,374	+		PFLU_RS27830	0.39	-1.1
6,194,375	-		PFLU_RS27830	0.39	-1.7
6,194,410	+		PFLU_RS27830	0.44	-0.5
6,194,523	+		PFLU_RS27830	0.59	+0.7
6,194,523	+		PFLU_RS27830	0.59	+0.4
6,194,523	+		PFLU_RS27830	0.59	-1.3
6,194,523	+		PFLU_RS27830	0.59	+1.0
6,194,524	-		PFLU_RS27830	0.59	-0.5
6,194,539	-		PFLU_RS27830	0.61	-1.6
6,194,539	-		PFLU_RS27830	0.61	+0.4
6,194,690	+		PFLU_RS27830	0.82	-2.6
6,194,690	+		PFLU_RS27830	0.82	+0.8
6,194,690	+		PFLU_RS27830	0.82	+2.8
6,194,690	+		PFLU_RS27830	0.82	-1.3
6,194,690	+		PFLU_RS27830	0.82	+1.8
6,194,690	+		PFLU_RS27830	0.82	+0.3
6,194,690	+		PFLU_RS27830	0.82	-0.7
6,194,690	+		PFLU_RS27830	0.82	+2.3
6,194,690	+		PFLU_RS27830	0.82	+2.6
6,194,690	+		PFLU_RS27830	0.82	+0.8
6,194,690	+		PFLU_RS27830	0.82	+3.0
6,194,690	+		PFLU_RS27830	0.82	-2.7
6,194,690	+		PFLU_RS27830	0.82	+0.8
6,194,690	+		PFLU_RS27830	0.82	-0.7
6,194,690	+		PFLU_RS27830	0.82	+3.6
6,194,691	-		PFLU_RS27830	0.82	-2.1
6,194,691	-		PFLU_RS27830	0.82	-2.0
6,194,691	-		PFLU_RS27830	0.82	-1.0
6,194,691	-		PFLU_RS27830	0.82	+3.0
6,194,691	-		PFLU_RS27830	0.82	-1.5
6,194,691	-		PFLU_RS27830	0.82	-0.7
6,194,691	-		PFLU_RS27830	0.82	-0.9
6,194,691	-		PFLU_RS27830	0.82	-2.7
6,194,691	-		PFLU_RS27830	0.82	-0.3
6,194,691	-		PFLU_RS27830	0.82	-2.3
6,194,691	-		PFLU_RS27830	0.82	+1.1
6,194,691	-		PFLU_RS27830	0.82	+1.8
6,194,717	+		PFLU_RS27830	0.86	+0.2
6,194,717	+		PFLU_RS27830	0.86	-0.2
6,194,717	+		PFLU_RS27830	0.86	+0.8
6,194,718	-		PFLU_RS27830	0.86	+2.8
6,194,718	-		PFLU_RS27830	0.86	-3.3
6,194,718	-		PFLU_RS27830	0.86	-1.6
6,194,718	-		PFLU_RS27830	0.86	+1.5
6,194,811	+				-0.5
6,194,812	-				+0.6
6,194,820	+				+2.7
6,194,820	+				-1.4
6,194,820	+				-0.0
6,194,820	+				-1.0
6,194,820	+				-2.1
6,194,820	+				+0.3
6,194,820	+				+1.0
6,194,820	+				+2.2
6,194,821	-				-1.4
6,194,821	-				+1.4
6,194,821	-				-2.2
6,194,821	-				-1.9
6,194,821	-				+1.5
6,194,821	-				-0.5
6,194,821	-				-2.3
6,194,821	-				-2.3
6,194,821	-				-0.2
6,194,843	+				+0.3
6,194,843	+				-1.1
6,194,844	-				-0.0
6,194,844	-				-0.9
6,194,844	-				+0.3
6,194,844	-				+1.8
6,194,875	+				-2.6
6,194,875	+				+2.2
6,194,875	+				+0.5
6,194,875	+				-0.5
6,194,947	+				+0.2
6,194,947	+				-1.5
6,194,947	+				+1.2
6,194,947	+				+3.1
6,194,947	+				-1.8
6,194,947	+				-1.7
6,194,947	+				-2.3
6,194,948	-				-2.3
6,194,948	-				-0.5
6,194,948	-				+1.4
6,194,948	-				-0.4
6,194,948	-				+0.1
6,194,948	-				+0.6
6,194,948	-				-2.5
6,195,145	+		PFLU_RS27835	0.22	-1.9
6,195,145	+		PFLU_RS27835	0.22	+1.2
6,195,145	+		PFLU_RS27835	0.22	-1.7
6,195,145	+		PFLU_RS27835	0.22	+0.1
6,195,145	+		PFLU_RS27835	0.22	-1.3
6,195,145	+		PFLU_RS27835	0.22	+2.8
6,195,145	+		PFLU_RS27835	0.22	+2.8
6,195,145	+		PFLU_RS27835	0.22	+1.3
6,195,146	-		PFLU_RS27835	0.23	+0.6
6,195,146	-		PFLU_RS27835	0.23	-0.0
6,195,146	-		PFLU_RS27835	0.23	+3.9
6,195,146	-		PFLU_RS27835	0.23	-1.5
6,195,146	-		PFLU_RS27835	0.23	+1.9
6,195,146	-		PFLU_RS27835	0.23	-1.7
6,195,146	-		PFLU_RS27835	0.23	-2.1
6,195,146	-		PFLU_RS27835	0.23	+1.8
6,195,146	-		PFLU_RS27835	0.23	-1.0
6,195,150	+		PFLU_RS27835	0.23	-0.5
6,195,150	+		PFLU_RS27835	0.23	-2.9
6,195,326	+		PFLU_RS27835	0.40	+1.7
6,195,326	+		PFLU_RS27835	0.40	+2.8
6,195,326	+		PFLU_RS27835	0.40	+1.4
6,195,364	+		PFLU_RS27835	0.44	-0.7
6,195,364	+		PFLU_RS27835	0.44	+2.1
6,195,365	-		PFLU_RS27835	0.44	+2.4
6,195,365	-		PFLU_RS27835	0.44	+2.8
6,195,657	-		PFLU_RS27835	0.72	+1.2
6,195,844	+		PFLU_RS27835	0.90	+0.0
6,195,844	+		PFLU_RS27835	0.90	+1.8
6,195,844	+		PFLU_RS27835	0.90	-1.1
6,195,845	-		PFLU_RS27835	0.90	-0.5
6,195,845	-		PFLU_RS27835	0.90	+0.8
6,195,845	-		PFLU_RS27835	0.90	+1.3
6,195,908	+				-0.7
6,195,909	-				+0.5
6,195,909	-				-0.2
6,195,909	-				+0.6
6,195,909	-				-1.0
6,195,974	+				+0.5
6,195,974	+				-1.8
6,195,975	-				+0.9
6,195,975	-				+1.2
6,195,990	+				+0.2
6,195,991	-				+2.8
6,195,991	-				+0.4
6,196,006	+				+0.2
6,196,006	+				+1.4
6,196,006	+				+0.2
6,196,006	+				+1.2
6,196,006	+				+2.1
6,196,006	+				-1.0
6,196,006	+				-1.7
6,196,006	+				+0.5
6,196,006	+				+0.5
6,196,006	+				-2.6
6,196,006	+				+2.4
6,196,006	+				-0.5
6,196,006	+				+1.5
6,196,006	+				+4.0
6,196,006	+				+1.2
6,196,006	+				+0.2
6,196,007	-				+1.2
6,196,007	-				+0.5
6,196,007	-				-1.8
6,196,007	-				+0.3
6,196,007	-				+1.5
6,196,007	-				+0.0
6,196,007	-				+0.8
6,196,007	-				+2.3
6,196,010	+				-2.1
6,196,010	+				-1.0
6,196,010	+				+0.9
6,196,010	+				+0.6
6,196,010	+				-1.4
6,196,010	+				+0.2
6,196,010	+				-2.1
6,196,010	+				-1.6
6,196,010	+				-0.9
6,196,010	+				+2.5
6,196,010	+				-1.6
6,196,010	+				+0.4
6,196,010	+				-1.8
6,196,010	+				-0.5
6,196,010	+				+1.4
6,196,010	+				-0.8
6,196,010	+				-1.1
6,196,010	+				+0.1
6,196,010	+				-0.7
6,196,010	+				-0.9
6,196,011	-				+0.8
6,196,011	-				+0.8
6,196,011	-				+1.8
6,196,011	-				-0.0
6,196,011	-				+2.3
6,196,011	-				+1.8
6,196,011	-				+0.1
6,196,011	-				-0.2
6,196,011	-				+1.9
6,196,011	-				+1.0
6,196,011	-				+1.1
6,196,011	-				-1.1
6,196,011	-				-2.3
6,196,011	-				-1.5
6,196,031	-				-1.5
6,196,089	+				+2.6
6,196,090	-				-0.0
6,196,115	-				+0.5
6,196,125	-				+0.6
6,196,134	+				-0.2
6,196,134	+				+1.0
6,196,135	-				-0.2
6,196,135	-				-1.3
6,196,181	+		PFLU_RS27840	0.26	-0.9
6,196,181	+		PFLU_RS27840	0.26	-1.2
6,196,212	+		PFLU_RS27840	0.42	+0.4
6,196,213	-		PFLU_RS27840	0.42	-2.0
6,196,213	-		PFLU_RS27840	0.42	+0.7
6,196,213	-		PFLU_RS27840	0.42	-1.2
6,196,263	+		PFLU_RS27840	0.67	-1.0
6,196,264	-		PFLU_RS27840	0.68	+1.6
6,196,264	-		PFLU_RS27840	0.68	+0.1
6,196,264	-		PFLU_RS27840	0.68	-0.0
6,196,264	-		PFLU_RS27840	0.68	+1.2
6,196,264	-		PFLU_RS27840	0.68	-0.7
6,196,264	-		PFLU_RS27840	0.68	+1.0
6,196,313	+				-2.3
6,196,313	+				-1.0
6,196,313	+				-0.5
6,196,314	-				-1.2
6,196,314	-				-1.1
6,196,314	-				+2.1
6,196,317	+				+1.1
6,196,318	-				-2.1
6,196,403	+				+2.4
6,196,403	+				+2.8
6,196,404	-				-2.7
6,196,419	+				+2.3
6,196,441	+				+2.7
6,196,441	+				-0.6
6,196,442	-				+1.0
6,196,442	-				+0.8
6,196,442	-				-0.4
6,196,442	-				-0.0
6,196,497	-				+1.3
6,196,643	+		PFLU_RS27845	0.11	-1.1
6,196,643	+		PFLU_RS27845	0.11	-0.4
6,196,644	-		PFLU_RS27845	0.11	-1.2
6,196,644	-		PFLU_RS27845	0.11	+3.7
6,196,669	+		PFLU_RS27845	0.13	-0.2
6,196,675	+		PFLU_RS27845	0.13	-1.7
6,196,675	+		PFLU_RS27845	0.13	-1.9
6,196,675	+		PFLU_RS27845	0.13	-2.3
6,196,675	+		PFLU_RS27845	0.13	+0.6
6,196,676	-		PFLU_RS27845	0.13	+1.8
6,196,676	-		PFLU_RS27845	0.13	-2.0
6,196,758	-		PFLU_RS27845	0.17	-1.7
6,196,795	+		PFLU_RS27845	0.20	+2.0
6,196,795	+		PFLU_RS27845	0.20	-1.5
6,196,795	+		PFLU_RS27845	0.20	+3.3
6,196,796	-		PFLU_RS27845	0.20	+0.5
6,196,796	-		PFLU_RS27845	0.20	+1.2
6,196,796	-		PFLU_RS27845	0.20	-0.3
6,196,796	-		PFLU_RS27845	0.20	+0.1
6,196,822	-		PFLU_RS27845	0.21	-0.4
6,196,822	-		PFLU_RS27845	0.21	+0.1
6,196,891	+		PFLU_RS27845	0.25	-1.0
6,196,891	+		PFLU_RS27845	0.25	+0.4
6,196,891	+		PFLU_RS27845	0.25	-1.2
6,196,891	+		PFLU_RS27845	0.25	+1.5
6,196,891	+		PFLU_RS27845	0.25	-3.4
6,196,892	-		PFLU_RS27845	0.25	+3.9
6,196,892	-		PFLU_RS27845	0.25	+1.9
6,196,918	+		PFLU_RS27845	0.26	-0.5
6,196,918	+		PFLU_RS27845	0.26	-2.2
6,196,918	+		PFLU_RS27845	0.26	+2.3
6,196,918	+		PFLU_RS27845	0.26	+1.4
6,196,919	-		PFLU_RS27845	0.26	+2.7
6,196,919	-		PFLU_RS27845	0.26	-0.8
6,196,940	-		PFLU_RS27845	0.28	-0.0
6,196,940	-		PFLU_RS27845	0.28	+2.8
6,196,951	+		PFLU_RS27845	0.28	-0.4
6,196,951	+		PFLU_RS27845	0.28	-1.3
6,196,951	+		PFLU_RS27845	0.28	+0.8
6,196,951	+		PFLU_RS27845	0.28	+0.8
6,196,951	+		PFLU_RS27845	0.28	+0.2
6,196,951	+		PFLU_RS27845	0.28	+1.4
6,196,951	+		PFLU_RS27845	0.28	-1.1
6,196,951	+		PFLU_RS27845	0.28	-1.1
6,196,951	+		PFLU_RS27845	0.28	+1.4
6,196,951	+		PFLU_RS27845	0.28	-0.7
6,196,951	+		PFLU_RS27845	0.28	+1.5
6,196,951	+		PFLU_RS27845	0.28	-1.8