Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21410

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
4,812,560	+		PFLU_RS21405	0.40	-1.1
4,812,561	-		PFLU_RS21405	0.40	-2.2
4,812,719	+		PFLU_RS21405	0.52	+3.0
4,812,719	+		PFLU_RS21405	0.52	-1.4
4,812,719	+		PFLU_RS21405	0.52	+2.0
4,812,719	+		PFLU_RS21405	0.52	-0.7
4,812,719	+		PFLU_RS21405	0.52	-1.7
4,812,719	+		PFLU_RS21405	0.52	-1.9
4,812,719	+		PFLU_RS21405	0.52	+1.6
4,812,719	+		PFLU_RS21405	0.52	+2.4
4,812,719	+		PFLU_RS21405	0.52	+2.4
4,812,719	+		PFLU_RS21405	0.52	+1.2
4,812,719	+		PFLU_RS21405	0.52	+1.9
4,812,719	+		PFLU_RS21405	0.52	+3.2
4,812,719	+		PFLU_RS21405	0.52	-2.9
4,812,720	-		PFLU_RS21405	0.52	+1.5
4,812,720	-		PFLU_RS21405	0.52	-1.6
4,812,720	-		PFLU_RS21405	0.52	+1.3
4,812,720	-		PFLU_RS21405	0.52	+1.0
4,812,720	-		PFLU_RS21405	0.52	+1.0
4,812,720	-		PFLU_RS21405	0.52	+2.2
4,812,720	-		PFLU_RS21405	0.52	-1.5
4,812,720	-		PFLU_RS21405	0.52	+0.2
4,812,720	-		PFLU_RS21405	0.52	-2.3
4,812,720	-		PFLU_RS21405	0.52	+0.7
4,812,720	-		PFLU_RS21405	0.52	+4.3
4,812,720	-		PFLU_RS21405	0.52	+4.2
4,812,720	-		PFLU_RS21405	0.52	+1.1
4,812,774	-		PFLU_RS21405	0.56	-1.2
4,812,774	-		PFLU_RS21405	0.56	+0.3
4,812,774	-		PFLU_RS21405	0.56	+1.1
4,812,785	+		PFLU_RS21405	0.57	-1.8
4,812,785	+		PFLU_RS21405	0.57	+1.0
4,812,785	+		PFLU_RS21405	0.57	-0.9
4,812,785	+		PFLU_RS21405	0.57	+1.4
4,812,785	+		PFLU_RS21405	0.57	+2.4
4,812,785	+		PFLU_RS21405	0.57	+2.1
4,812,785	+		PFLU_RS21405	0.57	+1.3
4,812,785	+		PFLU_RS21405	0.57	-0.0
4,812,785	+		PFLU_RS21405	0.57	-0.0
4,812,786	-		PFLU_RS21405	0.57	-2.5
4,812,786	-		PFLU_RS21405	0.57	+1.0
4,812,786	-		PFLU_RS21405	0.57	-0.0
4,812,808	+		PFLU_RS21405	0.59	+2.9
4,812,839	+		PFLU_RS21405	0.61	-2.3
4,812,839	+		PFLU_RS21405	0.61	-1.7
4,812,839	+		PFLU_RS21405	0.61	-0.0
4,812,839	+		PFLU_RS21405	0.61	-1.2
4,812,839	+		PFLU_RS21405	0.61	+1.0
4,812,839	+		PFLU_RS21405	0.61	-1.2
4,812,840	-		PFLU_RS21405	0.61	-0.9
4,812,840	-		PFLU_RS21405	0.61	-1.2
4,812,840	-		PFLU_RS21405	0.61	-2.7
4,812,856	+		PFLU_RS21405	0.62	-0.7
4,812,856	+		PFLU_RS21405	0.62	+0.7
4,812,856	+		PFLU_RS21405	0.62	-2.0
4,812,857	-		PFLU_RS21405	0.62	-1.2
4,812,869	+		PFLU_RS21405	0.63	+1.3
4,812,869	+		PFLU_RS21405	0.63	+0.4
4,812,870	-		PFLU_RS21405	0.63	-2.7
4,812,917	+		PFLU_RS21405	0.67	-1.0
4,812,917	+		PFLU_RS21405	0.67	-2.4
4,812,917	+		PFLU_RS21405	0.67	-0.9
4,812,918	-		PFLU_RS21405	0.67	+1.1
4,812,932	-		PFLU_RS21405	0.68	-0.9
4,812,983	+		PFLU_RS21405	0.72	-0.0
4,812,984	-		PFLU_RS21405	0.72	-0.3
4,813,134	+		PFLU_RS21405	0.84	+0.3
4,813,134	+		PFLU_RS21405	0.84	-1.0
4,813,134	+		PFLU_RS21405	0.84	+0.3
4,813,486	+				-0.7
4,813,487	-				+1.9
4,813,521	+				+0.3
4,813,521	+				+2.0
4,813,521	+				+2.7
4,813,521	+				+2.1
4,813,521	+				+2.4
4,813,521	+				-0.6
4,813,522	-				+0.1
4,813,522	-				+1.5
4,813,522	-				-2.1
4,813,552	+				-1.4
4,813,553	-				+4.7
4,813,644	+				-0.3
4,813,644	+				-1.0
4,813,644	+				-1.8
4,813,644	+				+2.4
4,813,644	+				+2.3
4,813,644	+				-1.5
4,813,644	+				-0.0
4,813,644	+				+0.2
4,813,645	-				-1.0
4,813,645	-				-0.5
4,813,645	-				-0.8
4,813,645	-				-1.9
4,813,645	-				-0.2
4,813,945	+		PFLU_RS21410	0.30	-0.7
4,813,946	-		PFLU_RS21410	0.30	+0.6
4,814,067	+		PFLU_RS21410	0.39	-1.6
4,814,067	+		PFLU_RS21410	0.39	-0.3
4,814,067	+		PFLU_RS21410	0.39	+2.4
4,814,067	+		PFLU_RS21410	0.39	+0.1
4,814,068	-		PFLU_RS21410	0.39	+2.7
4,814,068	-		PFLU_RS21410	0.39	+1.4
4,814,068	-		PFLU_RS21410	0.39	+1.6
4,814,089	+		PFLU_RS21410	0.41	-1.1
4,814,141	+		PFLU_RS21410	0.44	+0.3
4,814,141	+		PFLU_RS21410	0.44	+1.3
4,814,141	+		PFLU_RS21410	0.44	+2.7
4,814,142	-		PFLU_RS21410	0.45	+2.4
4,814,142	-		PFLU_RS21410	0.45	+1.9
4,814,311	+		PFLU_RS21410	0.57	+0.8
4,814,311	+		PFLU_RS21410	0.57	+2.3
4,814,311	+		PFLU_RS21410	0.57	+2.6
4,814,312	-		PFLU_RS21410	0.57	-1.3
4,814,444	+		PFLU_RS21410	0.67	-0.3
4,814,444	+		PFLU_RS21410	0.67	+0.2
4,814,444	+		PFLU_RS21410	0.67	+3.3
4,814,444	+		PFLU_RS21410	0.67	-0.7
4,814,444	+		PFLU_RS21410	0.67	+1.8
4,814,445	-		PFLU_RS21410	0.67	+3.7
4,814,445	-		PFLU_RS21410	0.67	+2.3
4,814,445	-		PFLU_RS21410	0.67	+0.9
4,814,445	-		PFLU_RS21410	0.67	-0.0
4,814,545	+		PFLU_RS21410	0.74	+0.2
4,814,546	-		PFLU_RS21410	0.75	+2.9
4,814,571	+		PFLU_RS21410	0.76	-1.6
4,814,698	+		PFLU_RS21410	0.86	-2.1
4,814,698	+		PFLU_RS21410	0.86	+0.7
4,814,898	+				+3.3
4,814,898	+				-0.7
4,814,901	+				+0.3
4,814,901	+				-1.9
4,814,901	+				-0.9
4,814,901	+				+1.9
4,814,901	+				+3.2
4,814,994	+		PFLU_RS31745	0.17	+0.7
4,814,995	-		PFLU_RS31745	0.17	+0.1
4,814,995	-		PFLU_RS31745	0.17	-0.9
4,814,995	-		PFLU_RS31745	0.17	+0.1
4,815,027	+		PFLU_RS31745	0.26	+3.5
4,815,028	-		PFLU_RS31745	0.26	+1.8
4,815,028	-		PFLU_RS31745	0.26	-1.2
4,815,073	+		PFLU_RS31745	0.38	-0.9
4,815,074	-		PFLU_RS31745	0.39	+2.1
4,815,097	+		PFLU_RS31745	0.45	+2.8
4,815,108	+		PFLU_RS31745	0.48	-2.3
4,815,108	+		PFLU_RS31745	0.48	+2.8
4,815,108	+		PFLU_RS31745	0.48	-0.8
4,815,108	+		PFLU_RS31745	0.48	+0.7
4,815,108	+		PFLU_RS31745	0.48	-2.2
4,815,108	+		PFLU_RS31745	0.48	-0.3
4,815,108	+		PFLU_RS31745	0.48	+4.3
4,815,108	+		PFLU_RS31745	0.48	-1.2
4,815,108	+		PFLU_RS31745	0.48	-0.0
4,815,108	+		PFLU_RS31745	0.48	+2.1
4,815,108	+		PFLU_RS31745	0.48	+0.3
4,815,108	+		PFLU_RS31745	0.48	-1.8
4,815,108	+		PFLU_RS31745	0.48	+1.9
4,815,108	+		PFLU_RS31745	0.48	+2.0
4,815,108	+		PFLU_RS31745	0.48	-1.0
4,815,109	-		PFLU_RS31745	0.48	+0.4
4,815,109	-		PFLU_RS31745	0.48	-0.2
4,815,109	-		PFLU_RS31745	0.48	-1.2
4,815,109	-		PFLU_RS31745	0.48	-1.4
4,815,109	-		PFLU_RS31745	0.48	-1.2
4,815,109	-		PFLU_RS31745	0.48	+2.4
4,815,109	-		PFLU_RS31745	0.48	-0.9
4,815,109	-		PFLU_RS31745	0.48	-1.9
4,815,109	-		PFLU_RS31745	0.48	+1.0
4,815,109	-		PFLU_RS31745	0.48	+6.9
4,815,109	-		PFLU_RS31745	0.48	+1.6
4,815,187	+		PFLU_RS31745	0.69	+2.2
4,815,211	+		PFLU_RS31745	0.76	+0.3
4,815,212	-		PFLU_RS31745	0.76	-1.9
4,815,212	-		PFLU_RS31745	0.76	-1.3
4,815,221	-		PFLU_RS31745	0.79	-1.2
4,815,283	+				-1.2
4,815,283	+				-0.2
4,815,284	-				+0.8
4,815,284	-				+2.6
4,815,298	-				-0.9
4,815,331	+				-2.1
4,815,331	+				-1.3
4,815,331	+				-1.7
4,815,331	+				+2.6
4,815,331	+				-2.2
4,815,331	+				+0.9
4,815,331	+				+2.5
4,815,331	+				+1.4
4,815,331	+				-0.2
4,815,331	+				-0.5
4,815,331	+				-1.4
4,815,331	+				+1.5
4,815,331	+				+1.0
4,815,331	+				-2.5
4,815,332	-				+1.2
4,815,332	-				+1.4
4,815,332	-				+1.4
4,815,332	-				+0.5
4,815,332	-				-0.2
4,815,332	-				-0.3
4,815,332	-				-1.3
4,815,332	-				+0.7
4,815,332	-				+1.2
4,815,332	-				+0.6
4,815,332	-				+1.1
4,815,332	-				-0.3
4,815,332	-				+0.2
4,815,332	-				+0.9
4,815,332	-				-2.5
4,815,425	+		PFLU_RS21415	0.13	+1.5
4,815,425	+		PFLU_RS21415	0.13	-0.7
4,815,425	+		PFLU_RS21415	0.13	-0.0
4,815,425	+		PFLU_RS21415	0.13	+1.3
4,815,425	+		PFLU_RS21415	0.13	+2.5
4,815,425	+		PFLU_RS21415	0.13	-0.1
4,815,425	+		PFLU_RS21415	0.13	+4.0
4,815,426	-		PFLU_RS21415	0.13	-1.2
4,815,426	-		PFLU_RS21415	0.13	+1.2
4,815,426	-		PFLU_RS21415	0.13	+0.6
4,815,426	-		PFLU_RS21415	0.13	-1.9
4,815,426	-		PFLU_RS21415	0.13	+2.4
4,815,445	+		PFLU_RS21415	0.16	+0.7
4,815,445	+		PFLU_RS21415	0.16	-0.7
4,815,445	+		PFLU_RS21415	0.16	-0.9
4,815,446	-		PFLU_RS21415	0.16	-2.7
4,815,503	+		PFLU_RS21415	0.23	-0.9
4,815,503	+		PFLU_RS21415	0.23	-0.4
4,815,503	+		PFLU_RS21415	0.23	+2.6
4,815,539	+		PFLU_RS21415	0.27	-1.2
4,815,540	-		PFLU_RS21415	0.28	-1.5
4,815,540	-		PFLU_RS21415	0.28	+0.7
4,815,574	+		PFLU_RS21415	0.32	-1.9
4,815,574	+		PFLU_RS21415	0.32	-0.4
4,815,574	+		PFLU_RS21415	0.32	-0.7
4,815,574	+		PFLU_RS21415	0.32	-0.9
4,815,574	+		PFLU_RS21415	0.32	-1.4
4,815,574	+		PFLU_RS21415	0.32	+2.3
4,815,574	+		PFLU_RS21415	0.32	-0.5
4,815,574	+		PFLU_RS21415	0.32	+0.6
4,815,574	+		PFLU_RS21415	0.32	+1.7
4,815,574	+		PFLU_RS21415	0.32	+0.7
4,815,575	-		PFLU_RS21415	0.32	-0.4
4,815,575	-		PFLU_RS21415	0.32	+1.6
4,815,575	-		PFLU_RS21415	0.32	+2.2
4,815,575	-		PFLU_RS21415	0.32	-1.0
4,815,575	-		PFLU_RS21415	0.32	-1.9
4,815,575	-		PFLU_RS21415	0.32	+1.3
4,815,575	-		PFLU_RS21415	0.32	-0.7
4,815,575	-		PFLU_RS21415	0.32	-1.0
4,815,575	-		PFLU_RS21415	0.32	+0.1
4,815,575	-		PFLU_RS21415	0.32	+0.7
4,815,575	-		PFLU_RS21415	0.32	-1.4
4,815,575	-		PFLU_RS21415	0.32	-1.4
4,815,575	-		PFLU_RS21415	0.32	+3.7
4,815,575	-		PFLU_RS21415	0.32	-1.9
4,815,575	-		PFLU_RS21415	0.32	+0.7
4,815,578	+		PFLU_RS21415	0.32	+1.0
4,815,578	+		PFLU_RS21415	0.32	+3.9
4,815,578	+		PFLU_RS21415	0.32	-0.6
4,815,578	+		PFLU_RS21415	0.32	-1.7
4,815,578	+		PFLU_RS21415	0.32	-1.7
4,815,578	+		PFLU_RS21415	0.32	-0.9
4,815,578	+		PFLU_RS21415	0.32	+0.3
4,815,578	+		PFLU_RS21415	0.32	+2.1
4,815,579	-		PFLU_RS21415	0.33	-0.9
4,815,579	-		PFLU_RS21415	0.33	+3.7
4,815,579	-		PFLU_RS21415	0.33	-0.7
4,815,579	-		PFLU_RS21415	0.33	-1.6
4,815,579	-		PFLU_RS21415	0.33	+0.1
4,815,579	-		PFLU_RS21415	0.33	-0.5
4,815,579	-		PFLU_RS21415	0.33	+0.7
4,815,579	-		PFLU_RS21415	0.33	-0.7
4,815,579	-		PFLU_RS21415	0.33	-0.2
4,815,579	-		PFLU_RS21415	0.33	+2.3
4,815,579	-		PFLU_RS21415	0.33	+2.5
4,815,579	-		PFLU_RS21415	0.33	-1.6
4,815,579	-		PFLU_RS21415	0.33	+3.6
4,815,579	-		PFLU_RS21415	0.33	+1.3
4,815,579	-		PFLU_RS21415	0.33	+0.5
4,815,579	-		PFLU_RS21415	0.33	-0.4
4,815,582	-		PFLU_RS21415	0.33	+1.8
4,815,582	-		PFLU_RS21415	0.33	+0.6
4,815,582	-		PFLU_RS21415	0.33	+0.7
4,815,582	-		PFLU_RS21415	0.33	+2.3
4,815,674	+		PFLU_RS21415	0.45	-1.7
4,815,674	+		PFLU_RS21415	0.45	+2.2
4,815,674	+		PFLU_RS21415	0.45	+0.3
4,815,674	+		PFLU_RS21415	0.45	-1.0
4,815,674	+		PFLU_RS21415	0.45	-0.3
4,815,674	+		PFLU_RS21415	0.45	+1.1
4,815,674	+		PFLU_RS21415	0.45	+2.5
4,815,674	+		PFLU_RS21415	0.45	+0.7
4,815,675	-		PFLU_RS21415	0.45	-0.0
4,815,675	-		PFLU_RS21415	0.45	+4.2
4,815,675	-		PFLU_RS21415	0.45	-1.1
4,815,675	-		PFLU_RS21415	0.45	+1.8
4,815,704	+		PFLU_RS21415	0.48	+1.1
4,815,704	+		PFLU_RS21415	0.48	+0.0
4,815,705	-		PFLU_RS21415	0.49	+0.3
4,815,750	-		PFLU_RS21415	0.54	-1.4
4,815,767	+		PFLU_RS21415	0.56	+3.6
4,815,767	+		PFLU_RS21415	0.56	+2.9
4,815,768	-		PFLU_RS21415	0.57	-1.2
4,815,768	-		PFLU_RS21415	0.57	-2.7
4,815,768	-		PFLU_RS21415	0.57	-0.2
4,815,833	+		PFLU_RS21415	0.65	-0.0
4,815,833	+		PFLU_RS21415	0.65	+1.2
4,815,833	+		PFLU_RS21415	0.65	+1.3
4,815,834	-		PFLU_RS21415	0.65	-1.2