Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14895

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
3,330,564	-		PFLU_RS14880	0.13	+1.2
3,330,616	-		PFLU_RS14880	0.19	-0.0
3,330,624	-		PFLU_RS14880	0.20	+0.7
3,330,657	+		PFLU_RS14880	0.23	-1.6
3,330,658	-		PFLU_RS14880	0.23	+1.0
3,330,658	-		PFLU_RS14880	0.23	-2.0
3,330,658	-		PFLU_RS14880	0.23	-1.1
3,330,658	-		PFLU_RS14880	0.23	-0.5
3,330,706	+		PFLU_RS14880	0.29	+0.7
3,330,736	-		PFLU_RS14880	0.32	+1.0
3,330,747	+		PFLU_RS14880	0.33	+2.7
3,330,748	-		PFLU_RS14880	0.33	+3.3
3,330,780	-		PFLU_RS14880	0.37	-1.4
3,330,859	+		PFLU_RS14880	0.45	-0.3
3,330,871	-		PFLU_RS14880	0.46	+1.7
3,330,981	-		PFLU_RS14880	0.58	+0.7
3,331,109	+		PFLU_RS14880	0.72	+0.2
3,331,214	+		PFLU_RS14880	0.83	+1.7
3,331,215	-		PFLU_RS14880	0.83	-0.8
3,331,224	-		PFLU_RS14880	0.84	-2.1
3,331,232	+		PFLU_RS14880	0.85	+0.7
3,331,388	-				-1.3
3,331,388	-				+0.7
3,331,395	-				+0.2
3,331,472	-				-0.8
3,331,500	+				+1.7
3,331,508	+				-2.0
3,331,509	-				+1.5
3,331,546	+				+0.7
3,331,604	-				+1.5
3,331,647	-				+2.7
3,331,680	-		PFLU_RS14895	0.11	-1.3
3,331,715	+		PFLU_RS14895	0.15	-1.3
3,331,745	+		PFLU_RS14895	0.18	-0.1
3,331,745	+		PFLU_RS14895	0.18	+0.1
3,331,746	-		PFLU_RS14895	0.18	+2.3
3,331,783	-		PFLU_RS14895	0.21	+1.1
3,331,796	-		PFLU_RS14895	0.22	+1.2
3,331,796	-		PFLU_RS14895	0.22	+0.7
3,331,796	-		PFLU_RS14895	0.22	+2.1
3,331,807	-		PFLU_RS14895	0.24	+0.1
3,331,879	+		PFLU_RS14895	0.30	+2.9
3,331,932	-		PFLU_RS14895	0.36	-1.1
3,331,996	+		PFLU_RS14895	0.42	+3.8
3,331,997	-		PFLU_RS14895	0.42	+2.4
3,331,999	+		PFLU_RS14895	0.42	+1.5
3,331,999	+		PFLU_RS14895	0.42	-1.4
3,332,000	-		PFLU_RS14895	0.42	+1.2
3,332,000	-		PFLU_RS14895	0.42	+0.1
3,332,000	-		PFLU_RS14895	0.42	+2.9
3,332,044	+		PFLU_RS14895	0.46	+1.7
3,332,166	+		PFLU_RS14895	0.58	+2.5
3,332,167	-		PFLU_RS14895	0.58	-1.4
3,332,168	+		PFLU_RS14895	0.58	-0.9
3,332,169	-		PFLU_RS14895	0.58	-0.3
3,332,169	-		PFLU_RS14895	0.58	+3.1
3,332,177	+		PFLU_RS14895	0.59	-0.6
3,332,178	-		PFLU_RS14895	0.59	+2.8
3,332,182	-		PFLU_RS14895	0.60	+0.4
3,332,182	-		PFLU_RS14895	0.60	+0.8
3,332,247	-		PFLU_RS14895	0.66	-1.6
3,332,251	+		PFLU_RS14895	0.66	+1.8
3,332,252	-		PFLU_RS14895	0.66	+2.4
3,332,281	-		PFLU_RS14895	0.69	+0.7
3,332,334	-		PFLU_RS14895	0.74	+0.3
3,332,432	+		PFLU_RS14895	0.84	-1.6
3,332,494	+		PFLU_RS14895	0.90	-1.7
3,332,511	-				-0.6
3,332,535	+				-1.3
3,332,615	-				+0.7
3,332,623	+				+3.2
3,332,624	-				-0.3
3,332,624	-				+0.1
3,332,638	+				+1.1
3,332,638	+				-2.8
3,332,638	+				+2.7
3,332,638	+				+1.7
3,332,638	+				+3.5
3,332,639	-				+0.1
3,332,672	+				-0.0
3,332,672	+				-0.0
3,332,708	+				-0.9
3,332,709	-				+1.9
3,332,717	+				-1.4
3,332,717	+				+0.0
3,332,728	+				-1.3
3,332,729	-				-1.1
3,332,733	+				-1.6
3,332,733	+				-0.3
3,332,733	+				+1.7
3,332,734	-				+3.0
3,332,764	+				+1.1
3,332,809	+				+0.3
3,332,833	+				-1.2
3,332,857	+				+0.5
3,332,857	+				+1.0
3,332,857	+				+1.9
3,332,857	+				+0.3
3,332,857	+				-2.0
3,332,857	+				+1.3
3,332,857	+				+3.8
3,332,858	-				+2.6
3,332,858	-				-1.9
3,332,858	-				-0.6
3,332,858	-				+3.3
3,332,858	-				+2.1
3,332,861	+				+3.3
3,332,861	+				-0.0
3,332,861	+				-2.5
3,332,861	+				-2.2
3,332,861	+				-0.6
3,332,862	-				-0.8
3,332,862	-				+0.1
3,332,862	-				+3.7
3,332,862	-				+1.4
3,332,862	-				-1.4
3,332,862	-				-1.6
3,332,888	-				+0.6
3,332,912	+				-0.4
3,332,913	-				+3.9
3,332,913	-				-0.9
3,332,932	+				+2.4
3,332,932	+				-0.6
3,332,932	+				+3.4
3,332,932	+				+1.9
3,332,946	+				-2.4
3,332,947	-				-3.2
3,332,992	+				-0.3
3,332,992	+				+2.0
3,332,996	+				+3.5
3,332,996	+				+1.3
3,332,996	+				-1.1
3,332,996	+				+0.7
3,332,996	+				-0.6
3,332,997	-				+0.6
3,332,997	-				-1.7
3,333,002	+				-2.1
3,333,002	+				-0.6
3,333,002	+				+1.2
3,333,003	-				+1.0
3,333,003	-				-2.2
3,333,003	-				+0.7
3,333,014	+				+1.3
3,333,029	+				+5.6
3,333,029	+				+0.1
3,333,030	-				-0.9
3,333,036	+				-1.1
3,333,037	-				+3.3
3,333,037	-				+1.7
3,333,037	-				-0.4
3,333,037	-				-0.9
3,333,040	+				-0.9
3,333,040	+				+0.1
3,333,040	+				-0.9
3,333,041	-				+1.0
3,333,041	-				-0.9
3,333,053	+				+2.7
3,333,053	+				+2.0
3,333,054	-				-0.9
3,333,110	+		PFLU_RS14900	0.14	+2.7
3,333,110	+		PFLU_RS14900	0.14	+0.5
3,333,110	+		PFLU_RS14900	0.14	-1.1
3,333,110	+		PFLU_RS14900	0.14	-0.3
3,333,110	+		PFLU_RS14900	0.14	+1.1
3,333,110	+		PFLU_RS14900	0.14	+1.7
3,333,111	-		PFLU_RS14900	0.14	-0.9
3,333,111	-		PFLU_RS14900	0.14	-0.6
3,333,111	-		PFLU_RS14900	0.14	+0.7
3,333,111	-		PFLU_RS14900	0.14	+4.3
3,333,111	-		PFLU_RS14900	0.14	-0.9
3,333,111	-		PFLU_RS14900	0.14	-1.1
3,333,111	-		PFLU_RS14900	0.14	+1.7
3,333,111	-		PFLU_RS14900	0.14	-1.6
3,333,111	-		PFLU_RS14900	0.14	-0.4
3,333,111	-		PFLU_RS14900	0.14	+0.1
3,333,114	+		PFLU_RS14900	0.14	-0.9
3,333,114	+		PFLU_RS14900	0.14	-0.3
3,333,114	+		PFLU_RS14900	0.14	+1.7
3,333,114	+		PFLU_RS14900	0.14	-1.6
3,333,114	+		PFLU_RS14900	0.14	-0.6
3,333,114	+		PFLU_RS14900	0.14	+0.9
3,333,115	-		PFLU_RS14900	0.14	+0.7
3,333,115	-		PFLU_RS14900	0.14	+3.1
3,333,115	-		PFLU_RS14900	0.14	-1.1
3,333,115	-		PFLU_RS14900	0.14	+0.1
3,333,115	-		PFLU_RS14900	0.14	-0.6
3,333,115	-		PFLU_RS14900	0.14	-1.7
3,333,115	-		PFLU_RS14900	0.14	-3.3
3,333,115	-		PFLU_RS14900	0.14	-1.0
3,333,160	+		PFLU_RS14900	0.19	+1.5
3,333,227	+		PFLU_RS14900	0.27	+0.1
3,333,227	+		PFLU_RS14900	0.27	+1.3
3,333,251	+		PFLU_RS14900	0.30	-0.6
3,333,251	+		PFLU_RS14900	0.30	+2.6
3,333,251	+		PFLU_RS14900	0.30	-1.4
3,333,252	-		PFLU_RS14900	0.30	-2.3
3,333,252	-		PFLU_RS14900	0.30	+2.6
3,333,252	-		PFLU_RS14900	0.30	-0.3
3,333,252	-		PFLU_RS14900	0.30	-1.3
3,333,366	+		PFLU_RS14900	0.43	+1.0
3,333,366	+		PFLU_RS14900	0.43	-0.9
3,333,366	+		PFLU_RS14900	0.43	-0.6
3,333,366	+		PFLU_RS14900	0.43	+1.0
3,333,367	-		PFLU_RS14900	0.43	-1.9
3,333,367	-		PFLU_RS14900	0.43	-0.7
3,333,367	-		PFLU_RS14900	0.43	-0.6
3,333,367	-		PFLU_RS14900	0.43	+1.1
3,333,367	-		PFLU_RS14900	0.43	-0.3
3,333,367	-		PFLU_RS14900	0.43	+0.7
3,333,367	-		PFLU_RS14900	0.43	-0.9
3,333,367	-		PFLU_RS14900	0.43	-0.6
3,333,367	-		PFLU_RS14900	0.43	-1.7
3,333,395	-		PFLU_RS14900	0.46	-1.3
3,333,430	-		PFLU_RS14900	0.50	-1.4
3,333,430	-		PFLU_RS14900	0.50	+1.6
3,333,471	+		PFLU_RS14900	0.55	+1.5
3,333,472	-		PFLU_RS14900	0.55	-1.3
3,333,503	-		PFLU_RS14900	0.59	+0.9
3,333,503	-		PFLU_RS14900	0.59	+1.3
3,333,590	+		PFLU_RS14900	0.69	-1.1
3,333,590	+		PFLU_RS14900	0.69	+1.2
3,333,591	-		PFLU_RS14900	0.69	-0.6
3,333,591	-		PFLU_RS14900	0.69	-1.7
3,333,591	-		PFLU_RS14900	0.69	+1.7
3,333,591	-		PFLU_RS14900	0.69	+0.8
3,333,591	-		PFLU_RS14900	0.69	-1.7