Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05970

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
1,333,680	+				+0.3
1,333,680	+				+1.9
1,333,681	-				-0.1
1,333,681	-				+1.4
1,333,792	+				-1.4
1,333,793	-				-1.6
1,333,822	-				+0.3
1,333,845	+				-1.2
1,333,845	+				-1.7
1,333,846	-				-0.6
1,333,846	-				+0.0
1,333,883	-				-2.0
1,333,883	-				+1.0
1,333,883	-				-1.1
1,333,883	-				+2.4
1,333,883	-				+2.1
1,333,888	+				-0.3
1,333,894	-				+1.7
1,334,020	+				-0.9
1,334,020	+				-0.5
1,334,020	+				-0.9
1,334,020	+				-0.3
1,334,020	+				+1.9
1,334,021	-				+3.4
1,334,021	-				-1.3
1,334,021	-				+0.9
1,334,028	-		PFLU_RS05965	0.11	+0.9
1,334,155	+		PFLU_RS05965	0.79	-1.5
1,334,254	+				+1.0
1,334,254	+				-1.6
1,334,254	+				+1.3
1,334,254	+				+0.5
1,334,254	+				+0.5
1,334,254	+				-2.6
1,334,254	+				+1.7
1,334,254	+				+0.9
1,334,254	+				-1.8
1,334,255	-				+0.2
1,334,255	-				+2.4
1,334,255	-				-0.6
1,334,255	-				+1.2
1,334,258	+				+4.0
1,334,258	+				+0.1
1,334,259	-				-0.4
1,334,259	-				+0.1
1,334,259	-				+1.2
1,334,259	-				-0.4
1,334,259	-				-1.7
1,334,284	+				-2.1
1,334,284	+				-1.7
1,334,284	+				+0.3
1,334,284	+				+0.2
1,334,285	-				-0.4
1,334,285	-				+1.9
1,334,285	-				+0.4
1,334,285	-				+0.4
1,334,290	+				+0.5
1,334,330	+				-2.0
1,334,549	-		PFLU_RS05970	0.19	+3.4
1,334,650	+		PFLU_RS05970	0.25	+0.9
1,334,650	+		PFLU_RS05970	0.25	-2.1
1,334,650	+		PFLU_RS05970	0.25	+2.2
1,334,651	-		PFLU_RS05970	0.25	+0.4
1,334,651	-		PFLU_RS05970	0.25	-0.6
1,334,651	-		PFLU_RS05970	0.25	+1.9
1,334,659	+		PFLU_RS05970	0.25	+2.7
1,334,660	-		PFLU_RS05970	0.25	-0.9
1,334,665	+		PFLU_RS05970	0.26	+2.2
1,334,665	+		PFLU_RS05970	0.26	-0.9
1,334,665	+		PFLU_RS05970	0.26	+0.4
1,334,665	+		PFLU_RS05970	0.26	-0.9
1,334,665	+		PFLU_RS05970	0.26	+0.9
1,334,665	+		PFLU_RS05970	0.26	+3.2
1,334,665	+		PFLU_RS05970	0.26	-2.5
1,334,665	+		PFLU_RS05970	0.26	+4.4
1,334,665	+		PFLU_RS05970	0.26	+0.9
1,334,665	+		PFLU_RS05970	0.26	+0.0
1,334,666	-		PFLU_RS05970	0.26	+2.2
1,334,666	-		PFLU_RS05970	0.26	-0.6
1,334,666	-		PFLU_RS05970	0.26	-1.4
1,334,666	-		PFLU_RS05970	0.26	-1.1
1,334,666	-		PFLU_RS05970	0.26	+0.1
1,334,666	-		PFLU_RS05970	0.26	-0.4
1,334,666	-		PFLU_RS05970	0.26	+2.2
1,334,745	-		PFLU_RS05970	0.31	+2.4
1,334,821	+		PFLU_RS05970	0.35	-2.0
1,334,822	-		PFLU_RS05970	0.35	-1.6
1,334,842	+		PFLU_RS05970	0.37	+0.9
1,334,843	-		PFLU_RS05970	0.37	-1.4
1,334,843	-		PFLU_RS05970	0.37	+1.6
1,334,843	-		PFLU_RS05970	0.37	-1.6
1,334,895	-		PFLU_RS05970	0.40	+2.1
1,335,050	+		PFLU_RS05970	0.49	+0.9
1,335,050	+		PFLU_RS05970	0.49	-1.5
1,335,050	+		PFLU_RS05970	0.49	+2.1
1,335,050	+		PFLU_RS05970	0.49	-1.6
1,335,050	+		PFLU_RS05970	0.49	+0.9
1,335,050	+		PFLU_RS05970	0.49	-0.9
1,335,050	+		PFLU_RS05970	0.49	-2.1
1,335,050	+		PFLU_RS05970	0.49	-1.0
1,335,050	+		PFLU_RS05970	0.49	+1.0
1,335,050	+		PFLU_RS05970	0.49	-1.1
1,335,050	+		PFLU_RS05970	0.49	-0.9
1,335,050	+		PFLU_RS05970	0.49	-0.1
1,335,051	-		PFLU_RS05970	0.49	+1.9
1,335,051	-		PFLU_RS05970	0.49	-1.1
1,335,051	-		PFLU_RS05970	0.49	-0.4
1,335,051	-		PFLU_RS05970	0.49	+0.4
1,335,051	-		PFLU_RS05970	0.49	+1.1
1,335,051	-		PFLU_RS05970	0.49	-0.6
1,335,051	-		PFLU_RS05970	0.49	-0.6
1,335,051	-		PFLU_RS05970	0.49	+0.7
1,335,051	-		PFLU_RS05970	0.49	-2.2
1,335,051	-		PFLU_RS05970	0.49	+0.1
1,335,101	+		PFLU_RS05970	0.53	+1.2
1,335,101	+		PFLU_RS05970	0.53	+1.6
1,335,102	-		PFLU_RS05970	0.53	-0.7
1,335,158	-		PFLU_RS05970	0.56	+1.2
1,335,193	+		PFLU_RS05970	0.58	-2.1
1,335,193	+		PFLU_RS05970	0.58	-1.6
1,335,194	-		PFLU_RS05970	0.58	+1.2
1,335,194	-		PFLU_RS05970	0.58	+3.1
1,335,194	-		PFLU_RS05970	0.58	+1.7
1,335,278	-		PFLU_RS05970	0.63	+0.1
1,335,278	-		PFLU_RS05970	0.63	-2.1
1,335,278	-		PFLU_RS05970	0.63	+1.3
1,335,278	-		PFLU_RS05970	0.63	+3.9
1,335,278	-		PFLU_RS05970	0.63	-1.0
1,335,313	+		PFLU_RS05970	0.66	+2.2
1,335,314	-		PFLU_RS05970	0.66	+1.7
1,335,343	+		PFLU_RS05970	0.67	+3.6
1,335,343	+		PFLU_RS05970	0.67	+0.4
1,335,343	+		PFLU_RS05970	0.67	-1.5
1,335,343	+		PFLU_RS05970	0.67	+1.7
1,335,343	+		PFLU_RS05970	0.67	-1.3
1,335,343	+		PFLU_RS05970	0.67	-0.4
1,335,344	-		PFLU_RS05970	0.67	+0.9
1,335,344	-		PFLU_RS05970	0.67	+0.4
1,335,344	-		PFLU_RS05970	0.67	+3.6
1,335,440	+		PFLU_RS05970	0.73	+2.3
1,335,440	+		PFLU_RS05970	0.73	+2.2
1,335,440	+		PFLU_RS05970	0.73	-0.7
1,335,441	-		PFLU_RS05970	0.73	-1.9
1,335,441	-		PFLU_RS05970	0.73	+0.9
1,335,441	-		PFLU_RS05970	0.73	-1.6
1,335,441	-		PFLU_RS05970	0.73	+4.3
1,335,441	-		PFLU_RS05970	0.73	-1.6
1,335,441	-		PFLU_RS05970	0.73	+1.1
1,335,441	-		PFLU_RS05970	0.73	-2.3
1,335,441	-		PFLU_RS05970	0.73	+0.8
1,335,441	-		PFLU_RS05970	0.73	+1.4
1,335,464	-		PFLU_RS05970	0.75	+2.1
1,335,464	-		PFLU_RS05970	0.75	+2.9
1,335,464	-		PFLU_RS05970	0.75	-1.0
1,335,622	+		PFLU_RS05970	0.85	-0.8
1,335,623	-		PFLU_RS05970	0.85	+0.4
1,335,694	+		PFLU_RS05970	0.89	-1.0
1,335,694	+		PFLU_RS05970	0.89	-1.4
1,335,695	-		PFLU_RS05970	0.89	+2.4
1,335,695	-		PFLU_RS05970	0.89	-2.1
1,335,695	-		PFLU_RS05970	0.89	+0.9
1,335,695	-		PFLU_RS05970	0.89	+1.0
1,335,827	-				+1.3
1,335,827	-				-0.9
1,335,827	-				-0.1
1,335,827	-				-3.1
1,335,872	+				-1.3
1,335,872	+				-1.8
1,335,873	-				-1.4
1,335,873	-				-2.1
1,335,873	-				-1.7
1,335,932	+				+0.3
1,335,933	-				-0.7
1,335,933	-				+1.1
1,335,971	+				-0.4
1,335,971	+				+2.5
1,335,971	+				+0.2
1,335,971	+				-1.1
1,335,971	+				+5.8
1,335,971	+				-2.1
1,335,972	-				+1.7
1,335,987	-				+0.5
1,335,991	+				-0.4
1,335,991	+				-1.7
1,335,992	-				+0.2
1,335,992	-				-1.1
1,336,009	-				-0.7
1,336,009	-				-0.6
1,336,024	+				-0.2
1,336,096	-				-1.1
1,336,223	+				-0.7
1,336,223	+				-0.3
1,336,223	+				-1.1
1,336,223	+				-1.7
1,336,223	+				-2.0
1,336,223	+				-1.6
1,336,223	+				-1.0
1,336,223	+				-1.6
1,336,223	+				-1.0
1,336,262	+				-2.7
1,336,263	-				-2.3
1,336,263	-				+2.4
1,336,263	-				+1.4
1,336,290	-				+1.0
1,336,395	+				-0.6
1,336,396	-				-1.2
1,336,396	-				-1.3
1,336,396	-				+1.7
1,336,410	-				+2.9
1,336,446	+		PFLU_RS05975	0.11	+0.3
1,336,447	-		PFLU_RS05975	0.11	+1.3
1,336,535	+		PFLU_RS05975	0.16	-1.1
1,336,535	+		PFLU_RS05975	0.16	+1.3
1,336,535	+		PFLU_RS05975	0.16	-0.6
1,336,535	+		PFLU_RS05975	0.16	-0.1
1,336,536	-		PFLU_RS05975	0.16	-1.1
1,336,536	-		PFLU_RS05975	0.16	+2.3
1,336,536	-		PFLU_RS05975	0.16	-0.6
1,336,536	-		PFLU_RS05975	0.16	-2.1
1,336,536	-		PFLU_RS05975	0.16	-1.4
1,336,536	-		PFLU_RS05975	0.16	+0.5
1,336,604	+		PFLU_RS05975	0.20	+2.5
1,336,604	+		PFLU_RS05975	0.20	-0.9
1,336,604	+		PFLU_RS05975	0.20	-1.5
1,336,604	+		PFLU_RS05975	0.20	-0.1
1,336,604	+		PFLU_RS05975	0.20	+1.1
1,336,605	-		PFLU_RS05975	0.20	+1.6
1,336,605	-		PFLU_RS05975	0.20	-0.1
1,336,605	-		PFLU_RS05975	0.20	+2.4
1,336,605	-		PFLU_RS05975	0.20	-0.7
1,336,605	-		PFLU_RS05975	0.20	+2.0
1,336,605	-		PFLU_RS05975	0.20	-0.9
1,336,674	-		PFLU_RS05975	0.23	+0.9
1,336,694	+		PFLU_RS05975	0.25	-0.9
1,336,694	+		PFLU_RS05975	0.25	-1.0
1,336,694	+		PFLU_RS05975	0.25	-1.3
1,336,694	+		PFLU_RS05975	0.25	+0.3
1,336,695	-		PFLU_RS05975	0.25	+1.0
1,336,695	-		PFLU_RS05975	0.25	-1.1
1,336,695	-		PFLU_RS05975	0.25	+0.3
1,336,712	+		PFLU_RS05975	0.25	-1.8
1,336,713	-		PFLU_RS05975	0.26	-0.7
1,336,713	-		PFLU_RS05975	0.26	-0.1
1,336,713	-		PFLU_RS05975	0.26	-0.4
1,336,713	-		PFLU_RS05975	0.26	+0.1
1,336,713	-		PFLU_RS05975	0.26	+5.4
1,336,713	-		PFLU_RS05975	0.26	+2.4
1,336,772	+		PFLU_RS05975	0.29	-1.1
1,336,772	+		PFLU_RS05975	0.29	-1.0
1,336,772	+		PFLU_RS05975	0.29	+1.9
1,336,772	+		PFLU_RS05975	0.29	+3.0
1,336,772	+		PFLU_RS05975	0.29	-1.9
1,336,772	+		PFLU_RS05975	0.29	+2.5
1,336,773	-		PFLU_RS05975	0.29	-0.4
1,336,773	-		PFLU_RS05975	0.29	-1.9
1,336,773	-		PFLU_RS05975	0.29	+0.1
1,336,773	-		PFLU_RS05975	0.29	-1.6
1,336,773	-		PFLU_RS05975	0.29	+0.9
1,336,784	+		PFLU_RS05975	0.29	-1.0
1,336,784	+		PFLU_RS05975	0.29	+1.2
1,336,785	-		PFLU_RS05975	0.29	-1.4
1,336,825	+		PFLU_RS05975	0.32	-1.9
1,336,841	+		PFLU_RS05975	0.32	-2.5
1,336,841	+		PFLU_RS05975	0.32	+2.3
1,336,842	-		PFLU_RS05975	0.32	+1.3
1,336,859	+		PFLU_RS05975	0.33	-1.1
1,336,859	+		PFLU_RS05975	0.33	-1.5
1,336,859	+		PFLU_RS05975	0.33	-0.4
1,336,859	+		PFLU_RS05975	0.33	-1.6
1,336,859	+		PFLU_RS05975	0.33	-1.4
1,336,859	+		PFLU_RS05975	0.33	-1.1
1,336,859	+		PFLU_RS05975	0.33	-2.2
1,336,859	+		PFLU_RS05975	0.33	-0.9
1,336,859	+		PFLU_RS05975	0.33	-3.5
1,336,859	+		PFLU_RS05975	0.33	-2.1
1,336,859	+		PFLU_RS05975	0.33	-0.9
1,336,859	+		PFLU_RS05975	0.33	+0.4
1,336,860	-		PFLU_RS05975	0.33	-0.9
1,336,860	-		PFLU_RS05975	0.33	+1.7
1,336,860	-		PFLU_RS05975	0.33	+0.3
1,336,860	-		PFLU_RS05975	0.33	-1.9
1,336,860	-		PFLU_RS05975	0.33	-1.1
1,336,860	-		PFLU_RS05975	0.33	-0.1
1,336,860	-		PFLU_RS05975	0.33	-1.4
1,336,860	-		PFLU_RS05975	0.33	-0.4
1,336,860	-		PFLU_RS05975	0.33	-1.4
1,336,860	-		PFLU_RS05975	0.33	-0.4
1,336,860	-		PFLU_RS05975	0.33	+2.2
1,336,860	-		PFLU_RS05975	0.33	+0.4