Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5420

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
6,223,552	+				-1.1
6,223,553	-				-0.4
6,223,553	-				+0.6
6,223,553	-				-1.0
6,223,558	+				+0.6
6,223,558	+				-0.4
6,223,559	-				-0.4
6,223,559	-				+0.6
6,223,919	+				-0.3
6,223,937	+				-0.3
6,223,938	-				+0.6
6,224,247	+		Pf6N2E2_5419	0.75	+0.6
6,224,247	+		Pf6N2E2_5419	0.75	+0.6
6,224,248	-		Pf6N2E2_5419	0.75	-0.4
6,224,248	-		Pf6N2E2_5419	0.75	+0.6
6,224,248	-		Pf6N2E2_5419	0.75	-1.0
6,224,248	-		Pf6N2E2_5419	0.75	+0.6
6,224,334	+				-0.4
6,224,334	+				+0.6
6,224,335	-				-0.4
6,224,335	-				-1.0
6,224,335	-				-2.4
6,224,335	-				+0.6
6,224,335	-				+0.6
6,224,355	-				+0.6
6,224,439	+				-0.4
6,224,641	-		Pf6N2E2_5420	0.15	-1.4
6,224,641	-		Pf6N2E2_5420	0.15	+0.6
6,224,824	-		Pf6N2E2_5420	0.27	+0.6
6,224,824	-		Pf6N2E2_5420	0.27	+0.6
6,224,824	-		Pf6N2E2_5420	0.27	-2.2
6,225,043	-		Pf6N2E2_5420	0.42	-2.7
6,225,043	-		Pf6N2E2_5420	0.42	+0.6
6,225,043	-		Pf6N2E2_5420	0.42	+0.6
6,225,043	-		Pf6N2E2_5420	0.42	-2.2
6,225,153	+		Pf6N2E2_5420	0.50	+0.6
6,225,154	-		Pf6N2E2_5420	0.50	+0.6
6,225,154	-		Pf6N2E2_5420	0.50	-0.4
6,225,154	-		Pf6N2E2_5420	0.50	-0.4
6,225,204	+		Pf6N2E2_5420	0.53	-2.3
6,225,538	-		Pf6N2E2_5420	0.75	-1.0
6,225,722	+		Pf6N2E2_5420	0.88	-0.4
6,225,722	+		Pf6N2E2_5420	0.88	+0.6
6,225,722	+		Pf6N2E2_5420	0.88	-0.4
6,225,890	+				+0.6
6,225,891	-				+0.6
6,226,144	+				-0.4
6,226,145	-				-0.9
6,226,156	+				-0.4
6,226,156	+				-0.7
6,226,156	+				-2.0
6,226,157	-				-1.1
6,226,240	+				-0.8
6,226,273	+				-0.1
6,226,399	+				+0.6