Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_278 and Pf6N2E2_279 are separated by 107 nucleotides Pf6N2E2_279 and Pf6N2E2_280 overlap by 24 nucleotides Pf6N2E2_280 and Pf6N2E2_281 are separated by 323 nucleotides
Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766
_278
Pf6N2E2_279 - Isocitrate lyase (EC 4.1.3.1), at 345,874 to 347,199
_279
Pf6N2E2_280 - hypothetical protein, at 347,176 to 347,331
_280
Pf6N2E2_281 - Type II and III secretion system family protein, at 347,655 to 348,416
_281
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 344.893 kb on + strand, within Pf6N2E2_278 at 344.894 kb on - strand, within Pf6N2E2_278 at 345.469 kb on + strand, within Pf6N2E2_278 at 345.661 kb on - strand at 345.661 kb on - strand at 346.001 kb on + strand at 346.002 kb on - strand at 346.071 kb on - strand, within Pf6N2E2_279 at 346.142 kb on + strand, within Pf6N2E2_279 at 346.143 kb on - strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.229 kb on + strand, within Pf6N2E2_279 at 346.230 kb on - strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.388 kb on + strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.389 kb on - strand, within Pf6N2E2_279 at 346.480 kb on - strand, within Pf6N2E2_279 at 346.670 kb on + strand, within Pf6N2E2_279 at 346.728 kb on - strand, within Pf6N2E2_279 at 346.736 kb on + strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.737 kb on - strand, within Pf6N2E2_279 at 346.841 kb on + strand, within Pf6N2E2_279 at 346.910 kb on + strand, within Pf6N2E2_279 at 346.910 kb on + strand, within Pf6N2E2_279 at 346.910 kb on + strand, within Pf6N2E2_279 at 346.911 kb on - strand, within Pf6N2E2_279 at 346.911 kb on - strand, within Pf6N2E2_279 at 346.911 kb on - strand, within Pf6N2E2_279 at 347.205 kb on + strand, within Pf6N2E2_280 at 347.205 kb on + strand, within Pf6N2E2_280 at 347.219 kb on + strand, within Pf6N2E2_280 at 347.220 kb on - strand, within Pf6N2E2_280 at 347.266 kb on - strand, within Pf6N2E2_280 at 347.329 kb on + strand at 347.330 kb on - strand at 347.371 kb on + strand at 347.399 kb on + strand at 347.399 kb on + strand at 347.399 kb on + strand at 347.400 kb on - strand at 347.400 kb on - strand at 347.400 kb on - strand at 347.400 kb on - strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.404 kb on - strand at 347.611 kb on + strand at 347.713 kb on + strand at 347.713 kb on + strand at 347.713 kb on + strand at 347.714 kb on - strand at 347.826 kb on + strand, within Pf6N2E2_281 at 347.827 kb on - strand, within Pf6N2E2_281 at 347.827 kb on - strand, within Pf6N2E2_281 at 347.827 kb on - strand at 347.911 kb on + strand, within Pf6N2E2_281 at 347.912 kb on - strand, within Pf6N2E2_281 at 347.912 kb on - strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 348.165 kb on - strand, within Pf6N2E2_281
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 344,893 + Pf6N2E2_278 0.55 +0.5 344,894 - Pf6N2E2_278 0.55 -0.5 345,469 + Pf6N2E2_278 0.85 -1.3 345,661 - +2.0 345,661 - +0.5 346,001 + +0.5 346,002 - -2.3 346,071 - Pf6N2E2_279 0.15 +0.5 346,142 + Pf6N2E2_279 0.20 -2.3 346,143 - Pf6N2E2_279 0.20 -6.2 346,229 + Pf6N2E2_279 0.27 +0.5 346,229 + Pf6N2E2_279 0.27 +0.5 346,229 + Pf6N2E2_279 0.27 +0.5 346,230 - Pf6N2E2_279 0.27 +0.5 346,388 + Pf6N2E2_279 0.39 -6.8 346,388 + Pf6N2E2_279 0.39 +0.5 346,388 + Pf6N2E2_279 0.39 -0.1 346,388 + Pf6N2E2_279 0.39 -1.1 346,388 + Pf6N2E2_279 0.39 -2.3 346,388 + Pf6N2E2_279 0.39 +0.5 346,389 - Pf6N2E2_279 0.39 +0.5 346,389 - Pf6N2E2_279 0.39 -6.0 346,389 - Pf6N2E2_279 0.39 +0.5 346,480 - Pf6N2E2_279 0.46 +0.5 346,670 + Pf6N2E2_279 0.60 -0.5 346,728 - Pf6N2E2_279 0.64 +0.5 346,736 + Pf6N2E2_279 0.65 +0.5 346,737 - Pf6N2E2_279 0.65 +0.5 346,737 - Pf6N2E2_279 0.65 -0.5 346,737 - Pf6N2E2_279 0.65 +0.5 346,841 + Pf6N2E2_279 0.73 -2.3 346,910 + Pf6N2E2_279 0.78 -1.5 346,910 + Pf6N2E2_279 0.78 +0.5 346,910 + Pf6N2E2_279 0.78 +0.5 346,911 - Pf6N2E2_279 0.78 +0.5 346,911 - Pf6N2E2_279 0.78 +0.5 346,911 - Pf6N2E2_279 0.78 +0.5 347,205 + Pf6N2E2_280 0.19 -0.5 347,205 + Pf6N2E2_280 0.19 -0.5 347,219 + Pf6N2E2_280 0.28 +0.5 347,220 - Pf6N2E2_280 0.28 +0.3 347,266 - Pf6N2E2_280 0.58 -0.5 347,329 + -1.1 347,330 - +0.5 347,371 + +0.5 347,399 + -0.5 347,399 + +0.5 347,399 + +0.5 347,400 - +0.5 347,400 - -0.5 347,400 - -1.5 347,400 - -2.1 347,403 + +0.5 347,403 + +0.5 347,403 + -2.9 347,403 + +0.5 347,404 - +0.5 347,611 + +0.5 347,713 + +0.5 347,713 + -0.0 347,713 + +0.5 347,714 - -0.5 347,826 + Pf6N2E2_281 0.22 +0.5 347,827 - Pf6N2E2_281 0.23 -0.5 347,827 - Pf6N2E2_281 0.23 -0.5 347,827 - +0.5 347,911 + Pf6N2E2_281 0.34 +0.5 347,912 - Pf6N2E2_281 0.34 +0.1 347,912 - Pf6N2E2_281 0.34 -1.1 347,962 + Pf6N2E2_281 0.40 -0.5 347,962 + Pf6N2E2_281 0.40 -1.1 347,962 + Pf6N2E2_281 0.40 +0.5 347,962 + Pf6N2E2_281 0.40 -0.5 347,963 - Pf6N2E2_281 0.40 +0.5 347,963 - Pf6N2E2_281 0.40 -2.3 347,963 - Pf6N2E2_281 0.40 +0.5 348,165 - Pf6N2E2_281 0.67 -0.5
Or see this region's nucleotide sequence