Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2113

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2111 and Pf6N2E2_2112 are separated by 35 nucleotidesPf6N2E2_2112 and Pf6N2E2_2113 are separated by 11 nucleotidesPf6N2E2_2113 and Pf6N2E2_2114 are separated by 688 nucleotides Pf6N2E2_2111 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data), at 2,508,111 to 2,508,809 _2111 Pf6N2E2_2112 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data), at 2,508,845 to 2,509,510 _2112 Pf6N2E2_2113 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 2,509,522 to 2,510,703 _2113 Pf6N2E2_2114 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 2,511,392 to 2,512,102 _2114 Position (kb) 2509 2510 2511Strain fitness (log2 ratio) -2 -1 0 1at 2508.744 kb on + strandat 2508.745 kb on - strandat 2508.839 kb on - strandat 2508.839 kb on - strandat 2508.902 kb on + strandat 2508.903 kb on - strandat 2508.903 kb on - strandat 2508.905 kb on + strandat 2508.947 kb on + strand, within Pf6N2E2_2112at 2508.947 kb on + strand, within Pf6N2E2_2112at 2508.948 kb on - strand, within Pf6N2E2_2112at 2509.177 kb on + strand, within Pf6N2E2_2112at 2509.177 kb on + strand, within Pf6N2E2_2112at 2509.178 kb on - strand, within Pf6N2E2_2112at 2509.178 kb on - strand, within Pf6N2E2_2112at 2509.178 kb on - strand, within Pf6N2E2_2112at 2509.888 kb on + strand, within Pf6N2E2_2113at 2509.888 kb on + strand, within Pf6N2E2_2113at 2509.888 kb on + strand, within Pf6N2E2_2113at 2509.889 kb on - strand, within Pf6N2E2_2113at 2510.023 kb on + strand, within Pf6N2E2_2113at 2510.023 kb on + strand, within Pf6N2E2_2113at 2510.023 kb on + strand, within Pf6N2E2_2113at 2510.024 kb on - strand, within Pf6N2E2_2113at 2510.024 kb on - strand, within Pf6N2E2_2113at 2511.387 kb on - strandat 2511.387 kb on - strandat 2511.702 kb on + strand, within Pf6N2E2_2114

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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2,508,744 + +0.5
2,508,745 - -1.4
2,508,839 - +0.5
2,508,839 - -0.5
2,508,902 + -1.1
2,508,903 - +0.5
2,508,903 - +0.5
2,508,905 + +0.5
2,508,947 + Pf6N2E2_2112 0.15 -0.5
2,508,947 + Pf6N2E2_2112 0.15 -1.3
2,508,948 - Pf6N2E2_2112 0.15 +0.5
2,509,177 + Pf6N2E2_2112 0.50 -1.5
2,509,177 + Pf6N2E2_2112 0.50 -0.5
2,509,178 - Pf6N2E2_2112 0.50 -1.1
2,509,178 - Pf6N2E2_2112 0.50 +0.5
2,509,178 - Pf6N2E2_2112 0.50 -1.5
2,509,888 + Pf6N2E2_2113 0.31 -2.1
2,509,888 + Pf6N2E2_2113 0.31 -0.5
2,509,888 + Pf6N2E2_2113 0.31 -0.5
2,509,889 - Pf6N2E2_2113 0.31 -1.3
2,510,023 + Pf6N2E2_2113 0.42 -0.5
2,510,023 + Pf6N2E2_2113 0.42 +0.5
2,510,023 + Pf6N2E2_2113 0.42 -0.5
2,510,024 - Pf6N2E2_2113 0.42 -1.1
2,510,024 - Pf6N2E2_2113 0.42 +0.5
2,511,387 - +0.5
2,511,387 - +0.5
2,511,702 + Pf6N2E2_2114 0.44 +0.5

Or see this region's nucleotide sequence