Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1386

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1384 and Pf6N2E2_1385 are separated by 16 nucleotidesPf6N2E2_1385 and Pf6N2E2_1386 are separated by 10 nucleotidesPf6N2E2_1386 and Pf6N2E2_1387 are separated by 5 nucleotidesPf6N2E2_1387 and Pf6N2E2_1388 overlap by 78 nucleotidesPf6N2E2_1388 and Pf6N2E2_1389 are separated by 137 nucleotides Pf6N2E2_1384 - SoxH protein, homolog, at 1,626,064 to 1,626,993 _1384 Pf6N2E2_1385 - FIG00956261: hypothetical protein, at 1,627,010 to 1,627,768 _1385 Pf6N2E2_1386 - amino acid ABC transporter, periplasmic substrate-binding protein, at 1,627,779 to 1,628,654 _1386 Pf6N2E2_1387 - Cytochrome C550 (Soluble cytochrome C), at 1,628,660 to 1,629,121 _1387 Pf6N2E2_1388 - hypothetical protein, at 1,629,044 to 1,629,238 _1388 Pf6N2E2_1389 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 1,629,376 to 1,631,232 _1389 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -2 -1 0 1at 1627.033 kb on + strandat 1627.033 kb on + strandat 1627.033 kb on + strandat 1627.034 kb on - strandat 1627.530 kb on - strand, within Pf6N2E2_1385at 1627.663 kb on - strand, within Pf6N2E2_1385at 1627.663 kb on - strand, within Pf6N2E2_1385at 1627.780 kb on + strandat 1627.786 kb on + strandat 1627.786 kb on + strandat 1627.787 kb on - strandat 1627.787 kb on - strandat 1627.787 kb on - strandat 1627.826 kb on - strandat 1627.826 kb on - strandat 1627.882 kb on + strand, within Pf6N2E2_1386at 1628.132 kb on - strand, within Pf6N2E2_1386at 1628.132 kb on - strand, within Pf6N2E2_1386at 1628.132 kb on - strand, within Pf6N2E2_1386at 1628.221 kb on + strand, within Pf6N2E2_1386at 1628.222 kb on - strand, within Pf6N2E2_1386at 1628.249 kb on - strand, within Pf6N2E2_1386at 1628.249 kb on - strand, within Pf6N2E2_1386at 1628.386 kb on + strand, within Pf6N2E2_1386at 1628.387 kb on - strand, within Pf6N2E2_1386at 1628.387 kb on - strand, within Pf6N2E2_1386at 1628.387 kb on - strand, within Pf6N2E2_1386at 1628.387 kb on - strand, within Pf6N2E2_1386at 1628.521 kb on + strand, within Pf6N2E2_1386at 1628.572 kb on - strandat 1628.581 kb on + strandat 1628.582 kb on - strandat 1628.676 kb on - strandat 1628.724 kb on + strand, within Pf6N2E2_1387at 1628.724 kb on + strand, within Pf6N2E2_1387at 1628.724 kb on + strand, within Pf6N2E2_1387at 1628.745 kb on + strand, within Pf6N2E2_1387at 1628.745 kb on + strand, within Pf6N2E2_1387at 1628.745 kb on + strand, within Pf6N2E2_1387at 1628.746 kb on - strand, within Pf6N2E2_1387at 1628.746 kb on - strand, within Pf6N2E2_1387at 1628.746 kb on - strand, within Pf6N2E2_1387at 1628.746 kb on - strand, within Pf6N2E2_1387at 1628.777 kb on + strand, within Pf6N2E2_1387at 1628.777 kb on + strand, within Pf6N2E2_1387at 1628.777 kb on + strand, within Pf6N2E2_1387at 1629.035 kb on + strand, within Pf6N2E2_1387at 1629.035 kb on + strand, within Pf6N2E2_1387at 1629.036 kb on - strand, within Pf6N2E2_1387at 1629.179 kb on - strand, within Pf6N2E2_1388at 1629.179 kb on - strand, within Pf6N2E2_1388at 1629.225 kb on + strandat 1629.225 kb on + strandat 1629.225 kb on + strandat 1629.225 kb on + strandat 1629.226 kb on - strandat 1629.226 kb on - strandat 1629.236 kb on + strandat 1629.237 kb on - strandat 1629.261 kb on - strandat 1629.611 kb on - strand, within Pf6N2E2_1389at 1629.611 kb on - strand, within Pf6N2E2_1389

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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1,627,033 + -0.4
1,627,033 + +0.0
1,627,033 + -0.6
1,627,034 - -0.5
1,627,530 - Pf6N2E2_1385 0.69 -1.0
1,627,663 - Pf6N2E2_1385 0.86 +0.4
1,627,663 - Pf6N2E2_1385 0.86 -0.7
1,627,780 + +0.4
1,627,786 + +0.4
1,627,786 + +0.4
1,627,787 - +0.4
1,627,787 - +0.4
1,627,787 - +0.4
1,627,826 - +0.4
1,627,826 - -0.6
1,627,882 + Pf6N2E2_1386 0.12 +0.4
1,628,132 - Pf6N2E2_1386 0.40 -0.6
1,628,132 - Pf6N2E2_1386 0.40 -0.6
1,628,132 - Pf6N2E2_1386 0.40 -2.6
1,628,221 + Pf6N2E2_1386 0.50 +0.4
1,628,222 - Pf6N2E2_1386 0.51 +0.4
1,628,249 - Pf6N2E2_1386 0.54 +0.4
1,628,249 - Pf6N2E2_1386 0.54 +0.4
1,628,386 + Pf6N2E2_1386 0.69 -0.9
1,628,387 - Pf6N2E2_1386 0.69 -0.6
1,628,387 - Pf6N2E2_1386 0.69 +0.4
1,628,387 - Pf6N2E2_1386 0.69 -1.6
1,628,387 - Pf6N2E2_1386 0.69 -0.6
1,628,521 + Pf6N2E2_1386 0.85 -2.0
1,628,572 - +0.4
1,628,581 + -1.9
1,628,582 - -0.6
1,628,676 - -1.6
1,628,724 + Pf6N2E2_1387 0.14 -0.8
1,628,724 + Pf6N2E2_1387 0.14 +0.4
1,628,724 + Pf6N2E2_1387 0.14 -1.8
1,628,745 + Pf6N2E2_1387 0.18 -0.6
1,628,745 + Pf6N2E2_1387 0.18 -1.2
1,628,745 + Pf6N2E2_1387 0.18 +0.4
1,628,746 - Pf6N2E2_1387 0.19 -1.2
1,628,746 - Pf6N2E2_1387 0.19 -0.6
1,628,746 - Pf6N2E2_1387 0.19 +0.4
1,628,746 - Pf6N2E2_1387 0.19 +0.4
1,628,777 + Pf6N2E2_1387 0.25 -2.4
1,628,777 + Pf6N2E2_1387 0.25 +0.4
1,628,777 + Pf6N2E2_1387 0.25 +0.4
1,629,035 + Pf6N2E2_1387 0.81 +0.4
1,629,035 + Pf6N2E2_1387 0.81 +0.4
1,629,036 - Pf6N2E2_1387 0.81 +0.4
1,629,179 - Pf6N2E2_1388 0.69 +0.4
1,629,179 - Pf6N2E2_1388 0.69 -0.6
1,629,225 + -0.6
1,629,225 + -0.6
1,629,225 + -0.6
1,629,225 + -0.6
1,629,226 - -1.6
1,629,226 - +0.4
1,629,236 + +0.4
1,629,237 - +0.4
1,629,261 - +0.4
1,629,611 - Pf6N2E2_1389 0.13 -0.6
1,629,611 - Pf6N2E2_1389 0.13 +0.4

Or see this region's nucleotide sequence