Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_691 and Pf6N2E2_692 overlap by 4 nucleotides Pf6N2E2_692 and Pf6N2E2_693 are separated by 274 nucleotides Pf6N2E2_693 and Pf6N2E2_694 overlap by 6 nucleotides
Pf6N2E2_691 - D-galactarate permease, at 797,045 to 798,442
_691
Pf6N2E2_692 - Glucarate dehydratase (EC 4.2.1.40), at 798,439 to 799,713
_692
Pf6N2E2_693 - hypothetical protein, at 799,988 to 800,125
_693
Pf6N2E2_694 - Outer membrane protein (porin), at 800,120 to 801,415
_694
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1 at 797.444 kb on + strand, within Pf6N2E2_691 at 797.444 kb on + strand, within Pf6N2E2_691 at 797.444 kb on + strand, within Pf6N2E2_691 at 797.445 kb on - strand, within Pf6N2E2_691 at 797.445 kb on - strand, within Pf6N2E2_691 at 797.447 kb on + strand, within Pf6N2E2_691 at 797.463 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.840 kb on + strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.841 kb on - strand, within Pf6N2E2_691 at 797.951 kb on + strand, within Pf6N2E2_691 at 798.140 kb on + strand, within Pf6N2E2_691 at 798.269 kb on + strand, within Pf6N2E2_691 at 798.439 kb on - strand at 798.439 kb on - strand at 798.562 kb on + strand at 798.562 kb on + strand at 798.563 kb on - strand at 798.563 kb on - strand at 798.583 kb on + strand, within Pf6N2E2_692 at 798.672 kb on + strand, within Pf6N2E2_692 at 798.892 kb on + strand, within Pf6N2E2_692 at 798.991 kb on + strand, within Pf6N2E2_692 at 799.110 kb on + strand, within Pf6N2E2_692 at 799.110 kb on + strand, within Pf6N2E2_692 at 799.168 kb on + strand, within Pf6N2E2_692 at 799.168 kb on + strand, within Pf6N2E2_692 at 799.927 kb on - strand at 799.952 kb on + strand at 799.952 kb on + strand at 799.953 kb on - strand at 799.953 kb on - strand at 799.953 kb on - strand at 799.990 kb on - strand at 799.990 kb on - strand at 799.990 kb on - strand at 800.055 kb on - strand, within Pf6N2E2_693 at 800.055 kb on - strand, within Pf6N2E2_693 at 800.055 kb on - strand, within Pf6N2E2_693 at 800.132 kb on - strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.169 kb on + strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.170 kb on - strand at 800.222 kb on + strand at 800.258 kb on + strand, within Pf6N2E2_694 at 800.273 kb on + strand, within Pf6N2E2_694 at 800.274 kb on - strand, within Pf6N2E2_694 at 800.309 kb on + strand, within Pf6N2E2_694 at 800.354 kb on + strand, within Pf6N2E2_694 at 800.354 kb on + strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.355 kb on - strand, within Pf6N2E2_694 at 800.480 kb on + strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694 at 800.481 kb on - strand, within Pf6N2E2_694
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 797,444 + Pf6N2E2_691 0.29 +0.3 797,444 + Pf6N2E2_691 0.29 +0.3 797,444 + Pf6N2E2_691 0.29 -0.4 797,445 - Pf6N2E2_691 0.29 +0.3 797,445 - Pf6N2E2_691 0.29 +0.3 797,447 + Pf6N2E2_691 0.29 -0.2 797,463 + Pf6N2E2_691 0.30 -0.7 797,840 + Pf6N2E2_691 0.57 +0.3 797,840 + Pf6N2E2_691 0.57 +0.3 797,840 + Pf6N2E2_691 0.57 +0.3 797,840 + Pf6N2E2_691 0.57 -0.3 797,840 + Pf6N2E2_691 0.57 +0.3 797,840 + Pf6N2E2_691 0.57 +0.3 797,840 + Pf6N2E2_691 0.57 -0.1 797,840 + Pf6N2E2_691 0.57 -0.7 797,841 - Pf6N2E2_691 0.57 -1.7 797,841 - Pf6N2E2_691 0.57 -0.7 797,841 - Pf6N2E2_691 0.57 -0.7 797,841 - Pf6N2E2_691 0.57 +0.3 797,841 - Pf6N2E2_691 0.57 +0.3 797,841 - Pf6N2E2_691 0.57 +0.3 797,841 - Pf6N2E2_691 0.57 -0.5 797,951 + Pf6N2E2_691 0.65 +0.3 798,140 + Pf6N2E2_691 0.78 +0.5 798,269 + Pf6N2E2_691 0.88 +0.3 798,439 - +0.3 798,439 - +0.3 798,562 + +0.4 798,562 + +0.3 798,563 - +0.3 798,563 - +0.3 798,583 + Pf6N2E2_692 0.11 +0.5 798,672 + Pf6N2E2_692 0.18 -0.7 798,892 + Pf6N2E2_692 0.36 -0.7 798,991 + Pf6N2E2_692 0.43 +0.3 799,110 + Pf6N2E2_692 0.53 +0.3 799,110 + Pf6N2E2_692 0.53 +1.2 799,168 + Pf6N2E2_692 0.57 -0.7 799,168 + Pf6N2E2_692 0.57 +0.3 799,927 - +1.5 799,952 + -0.7 799,952 + +1.3 799,953 - -0.7 799,953 - +0.3 799,953 - +1.2 799,990 - -0.7 799,990 - +0.5 799,990 - -0.7 800,055 - Pf6N2E2_693 0.49 +1.4 800,055 - Pf6N2E2_693 0.49 +0.3 800,055 - Pf6N2E2_693 0.49 +0.3 800,132 - +0.3 800,169 + +0.3 800,169 + -1.5 800,169 + +0.4 800,169 + +0.3 800,169 + -0.7 800,170 - +0.3 800,170 - +0.3 800,170 - +1.6 800,170 - +0.3 800,222 + +0.3 800,258 + Pf6N2E2_694 0.11 -0.7 800,273 + Pf6N2E2_694 0.12 +0.3 800,274 - Pf6N2E2_694 0.12 +0.3 800,309 + Pf6N2E2_694 0.15 +0.9 800,354 + Pf6N2E2_694 0.18 -0.7 800,354 + Pf6N2E2_694 0.18 +0.3 800,355 - Pf6N2E2_694 0.18 +0.9 800,355 - Pf6N2E2_694 0.18 +0.3 800,355 - Pf6N2E2_694 0.18 +0.3 800,355 - Pf6N2E2_694 0.18 -0.7 800,480 + Pf6N2E2_694 0.28 +0.3 800,481 - Pf6N2E2_694 0.28 +0.3 800,481 - Pf6N2E2_694 0.28 +0.3 800,481 - Pf6N2E2_694 0.28 +0.3 800,481 - Pf6N2E2_694 0.28 +0.3
Or see this region's nucleotide sequence