Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_691

Experiment: Ying_Nucleobase14 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_690 and Pf6N2E2_691 are separated by 108 nucleotidesPf6N2E2_691 and Pf6N2E2_692 overlap by 4 nucleotides Pf6N2E2_690 - Transcriptional regulator, LysR family, at 796,040 to 796,936 _690 Pf6N2E2_691 - D-galactarate permease, at 797,045 to 798,442 _691 Pf6N2E2_692 - Glucarate dehydratase (EC 4.2.1.40), at 798,439 to 799,713 _692 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1at 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.545 kb on + strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.627 kb on - strand, within Pf6N2E2_690at 796.805 kb on + strand, within Pf6N2E2_690at 796.805 kb on + strand, within Pf6N2E2_690at 796.806 kb on - strand, within Pf6N2E2_690at 796.971 kb on - strandat 797.115 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.278 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.388 kb on - strand, within Pf6N2E2_691at 797.391 kb on + strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.445 kb on - strand, within Pf6N2E2_691at 797.445 kb on - strand, within Pf6N2E2_691at 797.447 kb on + strand, within Pf6N2E2_691at 797.463 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.951 kb on + strand, within Pf6N2E2_691at 798.140 kb on + strand, within Pf6N2E2_691at 798.269 kb on + strand, within Pf6N2E2_691at 798.439 kb on - strandat 798.439 kb on - strandat 798.562 kb on + strandat 798.562 kb on + strandat 798.563 kb on - strandat 798.563 kb on - strandat 798.583 kb on + strand, within Pf6N2E2_692at 798.672 kb on + strand, within Pf6N2E2_692at 798.892 kb on + strand, within Pf6N2E2_692at 798.991 kb on + strand, within Pf6N2E2_692at 799.110 kb on + strand, within Pf6N2E2_692at 799.110 kb on + strand, within Pf6N2E2_692at 799.168 kb on + strand, within Pf6N2E2_692at 799.168 kb on + strand, within Pf6N2E2_692

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
remove
796,353 + Pf6N2E2_690 0.35 +0.3
796,353 + Pf6N2E2_690 0.35 -1.3
796,353 + Pf6N2E2_690 0.35 -1.5
796,354 - Pf6N2E2_690 0.35 -0.7
796,354 - Pf6N2E2_690 0.35 +0.3
796,354 - Pf6N2E2_690 0.35 +0.3
796,437 - Pf6N2E2_690 0.44 +0.3
796,437 - Pf6N2E2_690 0.44 -0.7
796,545 + Pf6N2E2_690 0.56 -0.5
796,546 - Pf6N2E2_690 0.56 -0.7
796,546 - Pf6N2E2_690 0.56 +0.3
796,627 - Pf6N2E2_690 0.65 -0.5
796,805 + Pf6N2E2_690 0.85 +1.3
796,805 + Pf6N2E2_690 0.85 +0.3
796,806 - Pf6N2E2_690 0.85 -0.7
796,971 - +0.3
797,115 + -1.9
797,150 + -1.0
797,150 + +0.3
797,150 + -1.3
797,150 + +0.3
797,278 + Pf6N2E2_691 0.17 -0.7
797,387 + Pf6N2E2_691 0.24 +0.3
797,387 + Pf6N2E2_691 0.24 +0.3
797,387 + Pf6N2E2_691 0.24 -0.2
797,387 + Pf6N2E2_691 0.24 +0.3
797,387 + Pf6N2E2_691 0.24 +0.3
797,387 + Pf6N2E2_691 0.24 -1.3
797,387 + Pf6N2E2_691 0.24 +0.3
797,387 + Pf6N2E2_691 0.24 +0.5
797,388 - Pf6N2E2_691 0.25 +0.3
797,391 + Pf6N2E2_691 0.25 +0.3
797,392 - Pf6N2E2_691 0.25 +0.3
797,392 - Pf6N2E2_691 0.25 +0.3
797,392 - Pf6N2E2_691 0.25 -0.7
797,392 - Pf6N2E2_691 0.25 +0.3
797,444 + Pf6N2E2_691 0.29 +0.3
797,444 + Pf6N2E2_691 0.29 +0.3
797,444 + Pf6N2E2_691 0.29 -0.4
797,445 - Pf6N2E2_691 0.29 +0.3
797,445 - Pf6N2E2_691 0.29 +0.3
797,447 + Pf6N2E2_691 0.29 -0.2
797,463 + Pf6N2E2_691 0.30 -0.7
797,840 + Pf6N2E2_691 0.57 +0.3
797,840 + Pf6N2E2_691 0.57 +0.3
797,840 + Pf6N2E2_691 0.57 +0.3
797,840 + Pf6N2E2_691 0.57 -0.3
797,840 + Pf6N2E2_691 0.57 +0.3
797,840 + Pf6N2E2_691 0.57 +0.3
797,840 + Pf6N2E2_691 0.57 -0.1
797,840 + Pf6N2E2_691 0.57 -0.7
797,841 - Pf6N2E2_691 0.57 -1.7
797,841 - Pf6N2E2_691 0.57 -0.7
797,841 - Pf6N2E2_691 0.57 -0.7
797,841 - Pf6N2E2_691 0.57 +0.3
797,841 - Pf6N2E2_691 0.57 +0.3
797,841 - Pf6N2E2_691 0.57 +0.3
797,841 - Pf6N2E2_691 0.57 -0.5
797,951 + Pf6N2E2_691 0.65 +0.3
798,140 + Pf6N2E2_691 0.78 +0.5
798,269 + Pf6N2E2_691 0.88 +0.3
798,439 - +0.3
798,439 - +0.3
798,562 + +0.4
798,562 + +0.3
798,563 - +0.3
798,563 - +0.3
798,583 + Pf6N2E2_692 0.11 +0.5
798,672 + Pf6N2E2_692 0.18 -0.7
798,892 + Pf6N2E2_692 0.36 -0.7
798,991 + Pf6N2E2_692 0.43 +0.3
799,110 + Pf6N2E2_692 0.53 +0.3
799,110 + Pf6N2E2_692 0.53 +1.2
799,168 + Pf6N2E2_692 0.57 -0.7
799,168 + Pf6N2E2_692 0.57 +0.3

Or see this region's nucleotide sequence