Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5364 and Pf6N2E2_5365 are separated by 230 nucleotides Pf6N2E2_5365 and Pf6N2E2_5366 overlap by 14 nucleotides Pf6N2E2_5366 and Pf6N2E2_5367 are separated by 9 nucleotides
Pf6N2E2_5364 - GGDEF domain protein, at 6,161,502 to 6,162,995
_5364
Pf6N2E2_5365 - Heavy metal sensor histidine kinase, at 6,163,226 to 6,164,593
_5365
Pf6N2E2_5366 - DNA-binding heavy metal response regulator, at 6,164,580 to 6,165,263
_5366
Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389
_5367
Position (kb)
6163
6164
6165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6162.249 kb on - strand, within Pf6N2E2_5364 at 6162.267 kb on + strand, within Pf6N2E2_5364 at 6162.267 kb on + strand, within Pf6N2E2_5364 at 6162.267 kb on + strand, within Pf6N2E2_5364 at 6162.409 kb on + strand, within Pf6N2E2_5364 at 6162.409 kb on + strand, within Pf6N2E2_5364 at 6162.410 kb on - strand, within Pf6N2E2_5364 at 6162.410 kb on - strand, within Pf6N2E2_5364 at 6162.410 kb on - strand, within Pf6N2E2_5364 at 6162.473 kb on - strand, within Pf6N2E2_5364 at 6162.586 kb on + strand, within Pf6N2E2_5364 at 6162.586 kb on + strand, within Pf6N2E2_5364 at 6162.586 kb on + strand, within Pf6N2E2_5364 at 6162.586 kb on + strand, within Pf6N2E2_5364 at 6162.587 kb on - strand, within Pf6N2E2_5364 at 6162.587 kb on - strand, within Pf6N2E2_5364 at 6162.587 kb on - strand, within Pf6N2E2_5364 at 6162.627 kb on + strand, within Pf6N2E2_5364 at 6162.627 kb on + strand, within Pf6N2E2_5364 at 6162.628 kb on - strand, within Pf6N2E2_5364 at 6162.628 kb on - strand, within Pf6N2E2_5364 at 6162.667 kb on + strand, within Pf6N2E2_5364 at 6162.667 kb on + strand, within Pf6N2E2_5364 at 6162.778 kb on + strand, within Pf6N2E2_5364 at 6162.778 kb on + strand, within Pf6N2E2_5364 at 6162.936 kb on + strand at 6163.127 kb on - strand at 6163.127 kb on - strand at 6163.506 kb on - strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.776 kb on + strand, within Pf6N2E2_5365 at 6163.777 kb on - strand, within Pf6N2E2_5365 at 6163.777 kb on - strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6163.890 kb on + strand, within Pf6N2E2_5365 at 6164.213 kb on + strand, within Pf6N2E2_5365 at 6164.446 kb on - strand, within Pf6N2E2_5365 at 6164.446 kb on - strand, within Pf6N2E2_5365 at 6164.502 kb on + strand at 6164.503 kb on - strand at 6164.503 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.505 kb on - strand at 6164.614 kb on + strand at 6164.615 kb on - strand at 6164.615 kb on - strand at 6164.615 kb on - strand at 6164.974 kb on + strand, within Pf6N2E2_5366 at 6164.974 kb on + strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6164.975 kb on - strand, within Pf6N2E2_5366 at 6165.078 kb on + strand, within Pf6N2E2_5366 at 6165.079 kb on - strand, within Pf6N2E2_5366 at 6165.131 kb on - strand, within Pf6N2E2_5366 at 6165.189 kb on - strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.190 kb on + strand, within Pf6N2E2_5366 at 6165.220 kb on + strand at 6165.221 kb on - strand at 6165.221 kb on - strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.358 kb on + strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.359 kb on - strand at 6165.360 kb on + strand at 6165.360 kb on + strand at 6165.360 kb on + strand at 6165.361 kb on - strand at 6165.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 6,162,249 - Pf6N2E2_5364 0.50 -0.8 6,162,267 + Pf6N2E2_5364 0.51 -0.9 6,162,267 + Pf6N2E2_5364 0.51 -0.6 6,162,267 + Pf6N2E2_5364 0.51 -1.1 6,162,409 + Pf6N2E2_5364 0.61 -0.6 6,162,409 + Pf6N2E2_5364 0.61 -1.1 6,162,410 - Pf6N2E2_5364 0.61 +0.4 6,162,410 - Pf6N2E2_5364 0.61 -1.0 6,162,410 - Pf6N2E2_5364 0.61 -1.1 6,162,473 - Pf6N2E2_5364 0.65 -2.1 6,162,586 + Pf6N2E2_5364 0.73 -1.6 6,162,586 + Pf6N2E2_5364 0.73 -0.3 6,162,586 + Pf6N2E2_5364 0.73 +1.0 6,162,586 + Pf6N2E2_5364 0.73 -0.6 6,162,587 - Pf6N2E2_5364 0.73 -0.6 6,162,587 - Pf6N2E2_5364 0.73 -1.1 6,162,587 - Pf6N2E2_5364 0.73 +0.4 6,162,627 + Pf6N2E2_5364 0.75 -0.6 6,162,627 + Pf6N2E2_5364 0.75 +0.4 6,162,628 - Pf6N2E2_5364 0.75 -0.4 6,162,628 - Pf6N2E2_5364 0.75 +0.0 6,162,667 + Pf6N2E2_5364 0.78 -1.2 6,162,667 + Pf6N2E2_5364 0.78 +0.4 6,162,778 + Pf6N2E2_5364 0.85 -0.6 6,162,778 + Pf6N2E2_5364 0.85 -0.6 6,162,936 + -0.6 6,163,127 - -2.3 6,163,127 - +0.4 6,163,506 - Pf6N2E2_5365 0.20 +0.4 6,163,776 + Pf6N2E2_5365 0.40 +1.7 6,163,776 + Pf6N2E2_5365 0.40 +0.4 6,163,776 + Pf6N2E2_5365 0.40 -0.6 6,163,776 + Pf6N2E2_5365 0.40 +1.0 6,163,776 + Pf6N2E2_5365 0.40 -0.6 6,163,776 + Pf6N2E2_5365 0.40 +1.9 6,163,777 - Pf6N2E2_5365 0.40 +1.8 6,163,777 - Pf6N2E2_5365 0.40 -0.6 6,163,890 + Pf6N2E2_5365 0.49 -0.6 6,163,890 + Pf6N2E2_5365 0.49 +0.4 6,163,890 + Pf6N2E2_5365 0.49 +2.2 6,164,213 + Pf6N2E2_5365 0.72 -0.6 6,164,446 - Pf6N2E2_5365 0.89 -0.6 6,164,446 - Pf6N2E2_5365 0.89 -0.6 6,164,502 + +0.3 6,164,503 - -0.6 6,164,503 - +0.4 6,164,505 - +0.4 6,164,505 - -0.6 6,164,505 - +1.0 6,164,505 - +0.9 6,164,614 + -0.6 6,164,615 - -1.0 6,164,615 - +0.4 6,164,615 - -3.5 6,164,974 + Pf6N2E2_5366 0.58 -0.6 6,164,974 + Pf6N2E2_5366 0.58 +0.4 6,164,975 - Pf6N2E2_5366 0.58 +0.4 6,164,975 - Pf6N2E2_5366 0.58 -1.6 6,164,975 - Pf6N2E2_5366 0.58 -0.6 6,164,975 - Pf6N2E2_5366 0.58 -1.1 6,165,078 + Pf6N2E2_5366 0.73 +1.0 6,165,079 - Pf6N2E2_5366 0.73 +1.4 6,165,131 - Pf6N2E2_5366 0.81 -0.6 6,165,189 - Pf6N2E2_5366 0.89 +0.4 6,165,190 + Pf6N2E2_5366 0.89 +0.4 6,165,190 + Pf6N2E2_5366 0.89 +0.4 6,165,190 + Pf6N2E2_5366 0.89 -0.6 6,165,220 + -1.1 6,165,221 - -0.9 6,165,221 - +0.4 6,165,358 + -0.8 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + -0.6 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + -0.6 6,165,358 + -1.1 6,165,358 + +0.4 6,165,358 + +0.4 6,165,358 + -1.6 6,165,358 + +0.4 6,165,358 + -2.9 6,165,358 + -0.4 6,165,359 - +0.9 6,165,359 - +0.4 6,165,359 - -2.7 6,165,359 - -0.6 6,165,359 - -0.7 6,165,359 - +0.4 6,165,359 - +0.4 6,165,359 - +0.4 6,165,359 - +0.4 6,165,359 - -1.0 6,165,359 - +0.4 6,165,359 - +0.4 6,165,359 - -0.6 6,165,359 - -0.6 6,165,359 - +0.4 6,165,359 - -0.1 6,165,359 - +0.4 6,165,359 - +0.4 6,165,360 + -1.1 6,165,360 + -0.6 6,165,360 + +0.4 6,165,361 - -1.1 6,165,361 - +0.4
Or see this region's nucleotide sequence