Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5327

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
6,121,343	+		Pf6N2E2_5326	0.29	-0.6
6,121,343	+		Pf6N2E2_5326	0.29	+0.4
6,121,343	+		Pf6N2E2_5326	0.29	+0.4
6,121,344	-		Pf6N2E2_5326	0.29	-0.2
6,121,354	+		Pf6N2E2_5326	0.30	+0.4
6,121,354	+		Pf6N2E2_5326	0.30	+0.4
6,121,354	+		Pf6N2E2_5326	0.30	+0.4
6,121,355	-		Pf6N2E2_5326	0.30	+0.4
6,121,377	+		Pf6N2E2_5326	0.32	+0.4
6,121,554	+		Pf6N2E2_5326	0.47	-1.1
6,121,554	+		Pf6N2E2_5326	0.47	-1.9
6,121,560	+		Pf6N2E2_5326	0.47	+0.4
6,121,561	-		Pf6N2E2_5326	0.47	+0.4
6,121,607	+		Pf6N2E2_5326	0.51	-2.2
6,121,767	+		Pf6N2E2_5326	0.65	-0.5
6,121,768	-		Pf6N2E2_5326	0.65	-0.7
6,121,813	+		Pf6N2E2_5326	0.68	+0.4
6,122,083	+				-0.3
6,122,084	-				-1.5
6,122,103	+				-1.1
6,122,104	-				+0.4
6,122,104	-				-1.9
6,122,301	+				-1.1
6,122,301	+				-0.6
6,122,301	+				-0.6
6,122,302	-				+0.4
6,122,302	-				-0.6
6,122,416	+		Pf6N2E2_5327	0.10	+0.4
6,122,417	-		Pf6N2E2_5327	0.10	+0.4
6,122,473	+		Pf6N2E2_5327	0.18	-1.1
6,122,473	+		Pf6N2E2_5327	0.18	-0.8
6,122,473	+		Pf6N2E2_5327	0.18	-0.6
6,122,473	+		Pf6N2E2_5327	0.18	-1.6
6,122,473	+		Pf6N2E2_5327	0.18	-1.4
6,122,594	-		Pf6N2E2_5327	0.34	+0.4
6,122,596	+		Pf6N2E2_5327	0.35	-1.6
6,122,597	-		Pf6N2E2_5327	0.35	+0.4
6,122,597	-		Pf6N2E2_5327	0.35	-0.7
6,122,597	-		Pf6N2E2_5327	0.35	-0.6
6,122,809	+		Pf6N2E2_5327	0.63	-0.6
6,122,881	+		Pf6N2E2_5327	0.73	+0.4
6,122,881	+		Pf6N2E2_5327	0.73	+0.4
6,122,881	+		Pf6N2E2_5327	0.73	-0.6
6,122,882	-		Pf6N2E2_5327	0.73	-0.6
6,122,882	-		Pf6N2E2_5327	0.73	+0.4
6,122,882	-		Pf6N2E2_5327	0.73	+0.4
6,123,028	+				+0.4
6,123,028	+				-1.0
6,123,028	+				+0.4
6,123,061	+				-0.6
6,123,061	+				+0.4
6,123,061	+				-0.6
6,123,061	+				+0.4
6,123,062	-				+0.4
6,123,062	-				-1.6
6,123,062	-				-0.1
6,123,070	+				-0.6
6,123,071	-				+0.4
6,123,090	+				+0.4
6,123,183	+				+0.4
6,123,184	-				-0.6
6,123,317	-				-1.0
6,123,372	+				-1.9
6,123,372	+				-2.6
6,123,372	+				-0.7
6,123,372	+				+0.4
6,123,373	-				+0.4
6,123,373	-				-0.3
6,123,373	-				-0.6
6,123,373	-				-0.6
6,123,433	-		Pf6N2E2_5328	0.14	-0.6
6,123,433	-		Pf6N2E2_5328	0.14	-1.9
6,123,433	-		Pf6N2E2_5328	0.14	-2.4
6,123,588	+		Pf6N2E2_5328	0.50	-2.4
6,123,589	-		Pf6N2E2_5328	0.50	-1.1
6,123,654	+		Pf6N2E2_5328	0.65	+0.4
6,123,654	+		Pf6N2E2_5328	0.65	-2.6
6,123,654	+		Pf6N2E2_5328	0.65	+0.4
6,123,788	+				+0.4
6,123,788	+				+0.4
6,123,788	+				+0.4
6,123,789	-				+0.4
6,123,789	-				-1.1
6,123,818	+				+0.4
6,123,819	-				+0.4
6,123,820	+				+0.4
6,123,835	+				-3.3
6,123,835	+				-0.6
6,123,836	-				-0.6
6,123,836	-				+0.4
6,123,836	-				+2.0
6,123,861	+				-3.1
6,123,861	+				+0.4
6,123,861	+				-0.6
6,123,861	+				-2.1
6,123,861	+				-2.6
6,123,861	+				-1.1
6,123,861	+				+0.4
6,123,862	-				-1.4
6,123,862	-				-1.1
6,123,862	-				+0.4
6,123,862	-				+0.4
6,123,864	-				-0.6
6,123,902	+				-1.1
6,123,903	-				-0.7
6,123,903	-				+0.4
6,123,903	-				+0.4
6,123,906	+				-1.1
6,123,906	+				-1.1
6,123,907	-				+0.4
6,123,907	-				+2.0
6,123,922	-				-0.6
6,123,922	-				-1.1
6,123,922	-				-0.6
6,123,952	+				-1.1
6,123,952	+				-1.1
6,123,953	-				-1.1
6,123,953	-				-0.6
6,123,953	-				-1.1
6,123,953	-				+0.4
6,123,953	-				-1.7
6,123,969	+				+0.4
6,123,970	-				-1.1
6,123,970	-				-0.6
6,124,007	+				-2.1
6,124,007	+				-1.6
6,124,007	+				-0.3
6,124,008	-				-0.6
6,124,008	-				-0.6