Experiment: Ying_Nucleobase14 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4771 and Pf6N2E2_4772 overlap by 35 nucleotides Pf6N2E2_4772 and Pf6N2E2_4773 overlap by 29 nucleotides Pf6N2E2_4773 and Pf6N2E2_4774 overlap by 4 nucleotides
Pf6N2E2_4771 - Coenzyme PQQ synthesis protein F (EC 3.4.99.-), at 5,511,362 to 5,513,191
_4771
Pf6N2E2_4772 - Coenzyme PQQ synthesis protein E, at 5,513,157 to 5,514,326
_4772
Pf6N2E2_4773 - Coenzyme PQQ synthesis protein D, at 5,514,298 to 5,514,573
_4773
Pf6N2E2_4774 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 5,514,570 to 5,515,322
_4774
Position (kb)
5513
5514
5515 Strain fitness (log2 ratio)
-2
-1
0
1 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.189 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.245 kb on + strand, within Pf6N2E2_4771 at 5512.246 kb on - strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.371 kb on + strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.372 kb on - strand, within Pf6N2E2_4771 at 5512.478 kb on + strand, within Pf6N2E2_4771 at 5512.478 kb on + strand, within Pf6N2E2_4771 at 5512.479 kb on - strand, within Pf6N2E2_4771 at 5512.518 kb on + strand, within Pf6N2E2_4771 at 5512.519 kb on - strand, within Pf6N2E2_4771 at 5512.811 kb on + strand, within Pf6N2E2_4771 at 5512.811 kb on + strand, within Pf6N2E2_4771 at 5512.899 kb on + strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.900 kb on - strand, within Pf6N2E2_4771 at 5512.974 kb on + strand, within Pf6N2E2_4771 at 5512.974 kb on + strand, within Pf6N2E2_4771 at 5512.975 kb on - strand, within Pf6N2E2_4771 at 5512.975 kb on - strand, within Pf6N2E2_4771 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.578 kb on + strand, within Pf6N2E2_4772 at 5513.667 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5513.722 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.028 kb on + strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.029 kb on - strand, within Pf6N2E2_4772 at 5514.208 kb on + strand, within Pf6N2E2_4772 at 5514.232 kb on + strand at 5514.233 kb on - strand at 5514.486 kb on - strand, within Pf6N2E2_4773 at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.573 kb on + strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.574 kb on - strand at 5514.578 kb on + strand at 5514.578 kb on + strand at 5514.579 kb on - strand at 5514.619 kb on + strand at 5514.641 kb on - strand at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.733 kb on + strand, within Pf6N2E2_4774 at 5514.734 kb on - strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.802 kb on + strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.803 kb on - strand, within Pf6N2E2_4774 at 5514.944 kb on - strand, within Pf6N2E2_4774 at 5515.158 kb on - strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.168 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.225 kb on + strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.226 kb on - strand, within Pf6N2E2_4774 at 5515.241 kb on - strand, within Pf6N2E2_4774 at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand at 5515.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3 remove 5,512,189 + Pf6N2E2_4771 0.45 +0.5 5,512,189 + Pf6N2E2_4771 0.45 +0.5 5,512,189 + Pf6N2E2_4771 0.45 -1.9 5,512,189 + Pf6N2E2_4771 0.45 +0.5 5,512,245 + Pf6N2E2_4771 0.48 -0.8 5,512,245 + Pf6N2E2_4771 0.48 -2.1 5,512,245 + Pf6N2E2_4771 0.48 -1.1 5,512,246 - Pf6N2E2_4771 0.48 +0.5 5,512,371 + Pf6N2E2_4771 0.55 +0.5 5,512,371 + Pf6N2E2_4771 0.55 -0.5 5,512,371 + Pf6N2E2_4771 0.55 -0.5 5,512,371 + Pf6N2E2_4771 0.55 +0.5 5,512,372 - Pf6N2E2_4771 0.55 +0.6 5,512,372 - Pf6N2E2_4771 0.55 +0.5 5,512,372 - Pf6N2E2_4771 0.55 -0.1 5,512,372 - Pf6N2E2_4771 0.55 +0.2 5,512,478 + Pf6N2E2_4771 0.61 +0.5 5,512,478 + Pf6N2E2_4771 0.61 +0.5 5,512,479 - Pf6N2E2_4771 0.61 -0.8 5,512,518 + Pf6N2E2_4771 0.63 +0.5 5,512,519 - Pf6N2E2_4771 0.63 +0.5 5,512,811 + Pf6N2E2_4771 0.79 +0.5 5,512,811 + Pf6N2E2_4771 0.79 -0.2 5,512,899 + Pf6N2E2_4771 0.84 -0.5 5,512,900 - Pf6N2E2_4771 0.84 -1.1 5,512,900 - Pf6N2E2_4771 0.84 -1.1 5,512,900 - Pf6N2E2_4771 0.84 +0.5 5,512,974 + Pf6N2E2_4771 0.88 -0.5 5,512,974 + Pf6N2E2_4771 0.88 +0.5 5,512,975 - Pf6N2E2_4771 0.88 -0.5 5,512,975 - Pf6N2E2_4771 0.88 -2.7 5,513,578 + Pf6N2E2_4772 0.36 -1.1 5,513,578 + Pf6N2E2_4772 0.36 -0.5 5,513,578 + Pf6N2E2_4772 0.36 -0.5 5,513,578 + Pf6N2E2_4772 0.36 +0.5 5,513,578 + Pf6N2E2_4772 0.36 +0.5 5,513,578 + Pf6N2E2_4772 0.36 -0.5 5,513,667 + Pf6N2E2_4772 0.44 +0.4 5,513,722 + Pf6N2E2_4772 0.48 +0.2 5,513,722 + Pf6N2E2_4772 0.48 +0.5 5,514,028 + Pf6N2E2_4772 0.74 +0.5 5,514,028 + Pf6N2E2_4772 0.74 +0.5 5,514,028 + Pf6N2E2_4772 0.74 +0.0 5,514,029 - Pf6N2E2_4772 0.75 -0.1 5,514,029 - Pf6N2E2_4772 0.75 -0.5 5,514,029 - Pf6N2E2_4772 0.75 -0.5 5,514,029 - Pf6N2E2_4772 0.75 -0.5 5,514,029 - Pf6N2E2_4772 0.75 +0.6 5,514,208 + Pf6N2E2_4772 0.90 -0.5 5,514,232 + -0.5 5,514,233 - +0.5 5,514,486 - Pf6N2E2_4773 0.68 +0.0 5,514,573 + -1.1 5,514,573 + -0.5 5,514,573 + -1.5 5,514,573 + +0.1 5,514,573 + +0.5 5,514,574 - -0.5 5,514,574 - +0.5 5,514,574 - -1.1 5,514,574 - -0.5 5,514,574 - -0.5 5,514,578 + +0.5 5,514,578 + -1.5 5,514,579 - +0.5 5,514,619 + -0.5 5,514,641 - +0.0 5,514,733 + Pf6N2E2_4774 0.22 -1.9 5,514,733 + Pf6N2E2_4774 0.22 -0.3 5,514,734 - Pf6N2E2_4774 0.22 -1.5 5,514,802 + Pf6N2E2_4774 0.31 +0.5 5,514,802 + Pf6N2E2_4774 0.31 +0.5 5,514,803 - Pf6N2E2_4774 0.31 +0.5 5,514,803 - Pf6N2E2_4774 0.31 +0.5 5,514,944 - Pf6N2E2_4774 0.50 +0.0 5,515,158 - Pf6N2E2_4774 0.78 +0.5 5,515,168 + Pf6N2E2_4774 0.79 +0.5 5,515,168 + Pf6N2E2_4774 0.79 -0.5 5,515,225 + Pf6N2E2_4774 0.87 +0.5 5,515,225 + Pf6N2E2_4774 0.87 -0.5 5,515,225 + Pf6N2E2_4774 0.87 -0.1 5,515,225 + Pf6N2E2_4774 0.87 -1.5 5,515,225 + Pf6N2E2_4774 0.87 +0.1 5,515,225 + Pf6N2E2_4774 0.87 -1.1 5,515,225 + Pf6N2E2_4774 0.87 -1.1 5,515,225 + Pf6N2E2_4774 0.87 +0.5 5,515,225 + Pf6N2E2_4774 0.87 -0.5 5,515,226 - Pf6N2E2_4774 0.87 -0.1 5,515,226 - Pf6N2E2_4774 0.87 +0.5 5,515,226 - Pf6N2E2_4774 0.87 +0.5 5,515,226 - Pf6N2E2_4774 0.87 +0.5 5,515,226 - Pf6N2E2_4774 0.87 +0.2 5,515,226 - Pf6N2E2_4774 0.87 -1.1 5,515,226 - Pf6N2E2_4774 0.87 -0.6 5,515,226 - Pf6N2E2_4774 0.87 +0.5 5,515,226 - Pf6N2E2_4774 0.87 +0.2 5,515,241 - Pf6N2E2_4774 0.89 -0.5 5,515,262 - -0.1 5,515,262 - -0.7 5,515,262 - -0.2 5,515,262 - -1.5 5,515,262 - -0.5
Or see this region's nucleotide sequence