Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4005

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,675,028	+				+0.5
4,675,154	-		Pf6N2E2_4004	0.14	+0.5
4,675,159	+		Pf6N2E2_4004	0.14	-0.5
4,675,160	-		Pf6N2E2_4004	0.14	+0.5
4,675,160	-		Pf6N2E2_4004	0.14	+0.5
4,675,243	+		Pf6N2E2_4004	0.26	-0.6
4,675,244	-		Pf6N2E2_4004	0.26	+0.5
4,675,465	+		Pf6N2E2_4004	0.57	+0.3
4,675,465	+		Pf6N2E2_4004	0.57	-0.7
4,675,465	+		Pf6N2E2_4004	0.57	-0.5
4,675,466	-		Pf6N2E2_4004	0.57	-0.2
4,675,522	+		Pf6N2E2_4004	0.65	-2.1
4,675,522	+		Pf6N2E2_4004	0.65	-0.5
4,675,541	+		Pf6N2E2_4004	0.67	-0.5
4,675,541	+		Pf6N2E2_4004	0.67	-0.5
4,675,542	-		Pf6N2E2_4004	0.68	+0.5
4,675,615	+		Pf6N2E2_4004	0.78	-0.1
4,675,615	+		Pf6N2E2_4004	0.78	-1.3
4,675,615	+		Pf6N2E2_4004	0.78	-0.5
4,675,620	+		Pf6N2E2_4004	0.78	-1.1
4,675,621	-		Pf6N2E2_4004	0.78	-0.7
4,675,672	+		Pf6N2E2_4004	0.86	+0.1
4,675,673	-		Pf6N2E2_4004	0.86	-0.5
4,675,788	+				+0.5
4,675,788	+				+0.5
4,675,810	+		Pf6N2E2_4005	0.16	-0.5
4,675,810	+		Pf6N2E2_4005	0.16	-2.3
4,675,874	+		Pf6N2E2_4005	0.38	-1.5
4,675,874	+		Pf6N2E2_4005	0.38	-1.1
4,675,874	+		Pf6N2E2_4005	0.38	-1.2
4,675,874	+		Pf6N2E2_4005	0.38	-0.5
4,675,874	+		Pf6N2E2_4005	0.38	+0.5
4,675,875	-		Pf6N2E2_4005	0.38	-0.5
4,675,875	-		Pf6N2E2_4005	0.38	+0.5
4,675,875	-		Pf6N2E2_4005	0.38	-0.5
4,675,875	-		Pf6N2E2_4005	0.38	-1.1
4,675,875	-		Pf6N2E2_4005	0.38	-1.8
4,676,057	-				-0.6
4,676,057	-				+0.5
4,676,091	-				+0.5
4,676,107	-				+0.8
4,676,107	-				+0.5
4,676,118	+				-0.5
4,676,118	+				+0.5
4,676,118	+				-0.5
4,676,118	+				+0.5
4,676,119	+				-0.5
4,676,119	-				+0.5
4,676,119	-				+0.5
4,676,229	+		Pf6N2E2_4006	0.12	-0.5
4,676,229	+		Pf6N2E2_4006	0.12	+0.5
4,676,229	+		Pf6N2E2_4006	0.12	-1.8
4,676,263	-		Pf6N2E2_4006	0.16	-1.2
4,676,301	+		Pf6N2E2_4006	0.19	-0.7
4,676,301	+		Pf6N2E2_4006	0.19	-0.8
4,676,301	+		Pf6N2E2_4006	0.19	-0.8
4,676,301	+		Pf6N2E2_4006	0.19	-0.9
4,676,302	-		Pf6N2E2_4006	0.19	-0.8
4,676,302	-		Pf6N2E2_4006	0.19	+0.5
4,676,316	+		Pf6N2E2_4006	0.21	-0.5
4,676,317	-		Pf6N2E2_4006	0.21	-0.5
4,676,509	+		Pf6N2E2_4006	0.40	-0.8
4,676,510	-		Pf6N2E2_4006	0.40	-0.5
4,676,510	-		Pf6N2E2_4006	0.40	+0.5
4,676,571	+		Pf6N2E2_4006	0.46	-0.5
4,676,572	-		Pf6N2E2_4006	0.46	+0.5
4,676,616	+		Pf6N2E2_4006	0.50	+0.5
4,676,766	+		Pf6N2E2_4006	0.65	+0.5
4,676,766	+		Pf6N2E2_4006	0.65	+0.5
4,676,766	+		Pf6N2E2_4006	0.65	+0.5
4,676,767	-		Pf6N2E2_4006	0.65	-0.5
4,676,767	-		Pf6N2E2_4006	0.65	-0.5
4,676,767	-		Pf6N2E2_4006	0.65	-1.5
4,676,767	-		Pf6N2E2_4006	0.65	-0.5
4,676,773	+		Pf6N2E2_4006	0.66	+0.5
4,676,773	+		Pf6N2E2_4006	0.66	+0.5
4,676,773	+		Pf6N2E2_4006	0.66	-0.5
4,676,773	+		Pf6N2E2_4006	0.66	-0.5
4,676,773	+		Pf6N2E2_4006	0.66	-1.1
4,676,774	-		Pf6N2E2_4006	0.66	-0.6
4,676,991	+		Pf6N2E2_4006	0.87	-0.5
4,676,991	+		Pf6N2E2_4006	0.87	-1.9
4,676,991	+		Pf6N2E2_4006	0.87	+1.3
4,676,991	+		Pf6N2E2_4006	0.87	-1.6
4,676,991	+		Pf6N2E2_4006	0.87	-0.5
4,676,991	+		Pf6N2E2_4006	0.87	+1.5
4,676,992	-		Pf6N2E2_4006	0.87	+0.5
4,676,992	-		Pf6N2E2_4006	0.87	-1.1
4,676,992	-		Pf6N2E2_4006	0.87	-0.5
4,676,992	-		Pf6N2E2_4006	0.87	-0.5
4,676,992	-		Pf6N2E2_4006	0.87	-0.5
4,677,021	+				-1.5
4,677,021	+				+0.5
4,677,022	-				-1.5
4,677,042	+				-1.5