Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3944

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,581,032	+		Pf6N2E2_3943	0.30	-0.4
4,581,032	+		Pf6N2E2_3943	0.30	-1.0
4,581,033	-		Pf6N2E2_3943	0.30	-0.5
4,581,136	+		Pf6N2E2_3943	0.43	-0.9
4,581,136	+		Pf6N2E2_3943	0.43	+0.5
4,581,137	-		Pf6N2E2_3943	0.43	-1.5
4,581,137	-		Pf6N2E2_3943	0.43	-0.8
4,581,229	+		Pf6N2E2_3943	0.55	-1.5
4,581,229	+		Pf6N2E2_3943	0.55	-0.8
4,581,229	+		Pf6N2E2_3943	0.55	+0.5
4,581,229	+		Pf6N2E2_3943	0.55	-0.5
4,581,230	-		Pf6N2E2_3943	0.55	-2.4
4,581,262	+		Pf6N2E2_3943	0.59	+0.5
4,581,263	-		Pf6N2E2_3943	0.59	-1.1
4,581,263	-		Pf6N2E2_3943	0.59	-0.5
4,581,263	-		Pf6N2E2_3943	0.59	+0.5
4,581,269	+		Pf6N2E2_3943	0.60	+0.5
4,581,270	-		Pf6N2E2_3943	0.60	-0.8
4,581,478	+		Pf6N2E2_3943	0.86	-0.5
4,581,478	+		Pf6N2E2_3943	0.86	+0.5
4,581,479	-		Pf6N2E2_3943	0.87	-1.1
4,581,540	+				-0.5
4,581,540	+				+0.5
4,581,540	+				-0.7
4,581,540	+				+0.5
4,581,541	-				+0.5
4,581,541	-				+0.5
4,581,574	+				-0.5
4,581,575	-				-1.1
4,581,575	-				-1.1
4,581,591	+				+0.8
4,581,592	-				+0.5
4,581,640	-				-0.8
4,581,647	-				+0.5
4,581,694	+				-0.5
4,581,760	+				+0.2
4,581,786	-				+0.5
4,581,858	+				-0.7
4,581,859	-				-0.5
4,581,901	+				-0.1
4,581,901	+				+0.5
4,581,902	-				+0.5
4,581,902	-				+0.5
4,582,460	+		Pf6N2E2_3944	0.74	-0.5
4,582,460	+		Pf6N2E2_3944	0.74	+0.5
4,582,506	+		Pf6N2E2_3944	0.80	-0.3
4,582,506	+		Pf6N2E2_3944	0.80	+0.5
4,582,507	-		Pf6N2E2_3944	0.80	+0.5
4,582,522	+		Pf6N2E2_3944	0.82	+0.5
4,582,522	+		Pf6N2E2_3944	0.82	-1.1
4,582,637	+				+0.5
4,582,637	+				+0.5
4,582,637	+				-0.4
4,582,637	+				-0.3
4,582,637	+				+0.5
4,582,682	+				-1.0
4,582,723	+				-0.8
4,583,511	+				-0.5
4,583,511	+				-0.1