Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3474

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,054,737	+		Pf6N2E2_3473	0.56	+0.3
4,054,737	+		Pf6N2E2_3473	0.56	-1.1
4,054,737	+		Pf6N2E2_3473	0.56	+0.5
4,054,737	+		Pf6N2E2_3473	0.56	-0.5
4,054,992	+		Pf6N2E2_3473	0.75	+0.5
4,054,992	+		Pf6N2E2_3473	0.75	+0.5
4,054,992	+		Pf6N2E2_3473	0.75	-0.5
4,054,992	+		Pf6N2E2_3473	0.75	-0.4
4,054,992	+		Pf6N2E2_3473	0.75	-0.5
4,054,993	-		Pf6N2E2_3473	0.75	-0.9
4,054,993	-		Pf6N2E2_3473	0.75	-1.1
4,054,993	-		Pf6N2E2_3473	0.75	-0.5
4,054,993	-		Pf6N2E2_3473	0.75	-0.5
4,054,993	-		Pf6N2E2_3473	0.75	-1.1
4,055,357	-				-0.5
4,055,357	-				+0.5
4,055,357	-				+0.5
4,055,357	-				-1.1
4,055,357	-				+1.1
4,055,357	-				+0.5
4,055,359	+				-1.0
4,055,359	+				-1.8
4,055,360	-				+0.5
4,055,371	-				-0.5
4,055,576	+				+0.5
4,055,576	+				+0.5
4,055,576	+				-1.3
4,055,576	+				+0.5
4,055,576	+				-1.2
4,055,577	-				-1.4
4,055,577	-				-0.6
4,055,577	-				-1.1
4,055,745	+		Pf6N2E2_3474	0.16	-0.5
4,055,747	+		Pf6N2E2_3474	0.16	-1.5
4,055,747	+		Pf6N2E2_3474	0.16	+0.5
4,055,747	+		Pf6N2E2_3474	0.16	-3.1
4,055,748	-		Pf6N2E2_3474	0.16	-1.5
4,056,080	+		Pf6N2E2_3474	0.46	-0.7
4,056,080	+		Pf6N2E2_3474	0.46	-1.1
4,056,087	-		Pf6N2E2_3474	0.47	-1.5
4,056,087	-		Pf6N2E2_3474	0.47	+0.5
4,056,087	-		Pf6N2E2_3474	0.47	+0.5
4,056,087	-		Pf6N2E2_3474	0.47	-0.8
4,056,087	-		Pf6N2E2_3474	0.47	+0.5
4,056,099	-		Pf6N2E2_3474	0.48	+0.5
4,056,099	-		Pf6N2E2_3474	0.48	+0.5
4,056,138	-		Pf6N2E2_3474	0.52	-0.5
4,056,138	-		Pf6N2E2_3474	0.52	+0.5
4,056,162	+		Pf6N2E2_3474	0.54	-1.1
4,056,163	-		Pf6N2E2_3474	0.54	-0.5
4,056,174	-		Pf6N2E2_3474	0.55	+0.5
4,056,251	+		Pf6N2E2_3474	0.62	+0.5
4,056,251	+		Pf6N2E2_3474	0.62	+0.5
4,056,276	-		Pf6N2E2_3474	0.64	+0.5
4,056,276	-		Pf6N2E2_3474	0.64	-1.1
4,056,276	-		Pf6N2E2_3474	0.64	+0.5
4,056,356	+		Pf6N2E2_3474	0.72	+1.5
4,056,356	+		Pf6N2E2_3474	0.72	-0.5
4,056,356	+		Pf6N2E2_3474	0.72	+0.5
4,056,699	+				-0.1
4,056,699	+				-0.2
4,056,699	+				+1.1
4,056,700	-				+0.5
4,056,700	-				-0.5
4,056,700	-				-0.5
4,056,706	+				-1.1
4,056,706	+				-1.5
4,056,706	+				-0.8
4,056,706	+				-0.6
4,056,707	-				+0.5
4,056,708	+				-0.9
4,056,708	+				-0.5
4,056,708	+				-1.1
4,056,708	+				+0.5
4,056,708	+				-0.5
4,056,709	-				-0.5
4,056,709	-				-0.5
4,056,796	-		Pf6N2E2_3475	0.12	-0.5
4,056,908	+		Pf6N2E2_3475	0.86	-1.0
4,056,909	-		Pf6N2E2_3475	0.86	-0.5
4,057,089	+				-0.5
4,057,090	-		Pf6N2E2_3476	0.10	-0.7
4,057,122	+		Pf6N2E2_3476	0.13	-0.5
4,057,123	-		Pf6N2E2_3476	0.13	+0.5
4,057,123	-		Pf6N2E2_3476	0.13	+0.5
4,057,185	+		Pf6N2E2_3476	0.19	+0.5
4,057,185	+		Pf6N2E2_3476	0.19	-0.3
4,057,186	-		Pf6N2E2_3476	0.19	-1.1
4,057,186	-		Pf6N2E2_3476	0.19	+0.1
4,057,186	-		Pf6N2E2_3476	0.19	-0.5
4,057,186	-		Pf6N2E2_3476	0.19	+0.5
4,057,186	-		Pf6N2E2_3476	0.19	-0.1
4,057,186	-		Pf6N2E2_3476	0.19	-0.5
4,057,251	+		Pf6N2E2_3476	0.25	-0.5
4,057,252	-		Pf6N2E2_3476	0.25	-1.0
4,057,252	-		Pf6N2E2_3476	0.25	-1.0
4,057,252	-		Pf6N2E2_3476	0.25	-0.5
4,057,281	+		Pf6N2E2_3476	0.28	+0.5
4,057,347	+		Pf6N2E2_3476	0.34	-1.1
4,057,374	+		Pf6N2E2_3476	0.36	+0.5
4,057,389	+		Pf6N2E2_3476	0.38	+0.5
4,057,389	+		Pf6N2E2_3476	0.38	+0.5
4,057,389	+		Pf6N2E2_3476	0.38	-0.5
4,057,390	-		Pf6N2E2_3476	0.38	+0.5
4,057,390	-		Pf6N2E2_3476	0.38	+0.5
4,057,390	-		Pf6N2E2_3476	0.38	+0.5
4,057,390	-		Pf6N2E2_3476	0.38	-0.5
4,057,390	-		Pf6N2E2_3476	0.38	-0.3
4,057,390	-		Pf6N2E2_3476	0.38	-0.5
4,057,390	-		Pf6N2E2_3476	0.38	-1.3
4,057,390	-		Pf6N2E2_3476	0.38	-0.5
4,057,390	-		Pf6N2E2_3476	0.38	+0.5
4,057,390	-		Pf6N2E2_3476	0.38	+0.5
4,057,456	+		Pf6N2E2_3476	0.44	-1.1
4,057,457	-		Pf6N2E2_3476	0.44	-0.5
4,057,457	-		Pf6N2E2_3476	0.44	-1.7
4,057,457	-		Pf6N2E2_3476	0.44	-1.5
4,057,521	+		Pf6N2E2_3476	0.50	-0.5
4,057,521	+		Pf6N2E2_3476	0.50	-0.2
4,057,521	+		Pf6N2E2_3476	0.50	+0.5
4,057,521	+		Pf6N2E2_3476	0.50	+0.5
4,057,522	-		Pf6N2E2_3476	0.50	+0.5
4,057,522	-		Pf6N2E2_3476	0.50	-0.5
4,057,522	-		Pf6N2E2_3476	0.50	-0.5
4,057,522	-		Pf6N2E2_3476	0.50	-1.8
4,057,522	-		Pf6N2E2_3476	0.50	-0.3