Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2751

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,242,253	+		Pf6N2E2_2750	0.18	+0.3
3,242,253	+		Pf6N2E2_2750	0.18	+0.3
3,242,253	+		Pf6N2E2_2750	0.18	-3.0
3,242,254	-		Pf6N2E2_2750	0.19	-0.7
3,242,254	-		Pf6N2E2_2750	0.19	+0.3
3,242,254	-		Pf6N2E2_2750	0.19	-1.7
3,242,287	+		Pf6N2E2_2750	0.22	-1.7
3,242,288	-		Pf6N2E2_2750	0.22	-1.7
3,242,365	+		Pf6N2E2_2750	0.29	-0.7
3,242,413	+		Pf6N2E2_2750	0.33	+0.3
3,242,443	+		Pf6N2E2_2750	0.36	-1.9
3,242,443	+		Pf6N2E2_2750	0.36	-0.7
3,242,443	+		Pf6N2E2_2750	0.36	+0.3
3,242,444	-		Pf6N2E2_2750	0.36	+0.3
3,242,444	-		Pf6N2E2_2750	0.36	-0.7
3,242,444	-		Pf6N2E2_2750	0.36	+0.3
3,242,444	-		Pf6N2E2_2750	0.36	+0.3
3,242,444	-		Pf6N2E2_2750	0.36	+0.3
3,242,444	-		Pf6N2E2_2750	0.36	-0.7
3,242,444	-		Pf6N2E2_2750	0.36	+0.3
3,242,491	+		Pf6N2E2_2750	0.41	-3.1
3,242,492	-		Pf6N2E2_2750	0.41	+0.3
3,242,632	+		Pf6N2E2_2750	0.54	+0.3
3,242,633	-		Pf6N2E2_2750	0.54	-0.7
3,242,633	-		Pf6N2E2_2750	0.54	-0.7
3,242,633	-		Pf6N2E2_2750	0.54	-0.8
3,242,872	-		Pf6N2E2_2750	0.76	+0.3
3,242,977	+		Pf6N2E2_2750	0.86	+0.3
3,243,092	-				-0.7
3,243,092	-				-2.0
3,243,380	+				-1.2
3,243,380	+				+0.3
3,243,427	+				-1.5
3,243,428	-				+0.0
3,243,432	+				-1.9
3,243,432	+				-0.7
3,243,432	+				+0.3
3,243,432	+				+0.3
3,243,433	-				+0.9
3,243,433	-				-1.2
3,243,433	-				-0.1
3,243,459	+				-0.7
3,243,464	+				-0.7
3,243,464	+				-1.8
3,243,464	+				-2.6
3,243,464	+				+0.3
3,243,465	-				+0.3
3,243,481	-				+0.3
3,243,688	+		Pf6N2E2_2752	0.14	-1.2
3,243,688	+		Pf6N2E2_2752	0.14	+0.3
3,243,689	-		Pf6N2E2_2752	0.14	+0.3
3,243,706	+		Pf6N2E2_2752	0.15	+0.3
3,243,706	+		Pf6N2E2_2752	0.15	-0.7
3,243,707	-		Pf6N2E2_2752	0.15	-1.2
3,243,853	+		Pf6N2E2_2752	0.25	+0.3
3,243,854	-		Pf6N2E2_2752	0.25	-0.7
3,244,117	+		Pf6N2E2_2752	0.44	-0.7
3,244,321	+		Pf6N2E2_2752	0.58	-0.7
3,244,321	+		Pf6N2E2_2752	0.58	-1.2
3,244,321	+		Pf6N2E2_2752	0.58	-1.2
3,244,322	-		Pf6N2E2_2752	0.58	-1.2
3,244,322	-		Pf6N2E2_2752	0.58	+0.3