Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_162

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_161 and Pf6N2E2_162 are separated by 58 nucleotidesPf6N2E2_162 and Pf6N2E2_163 overlap by 4 nucleotidesPf6N2E2_163 and Pf6N2E2_164 are separated by 3 nucleotides Pf6N2E2_161 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 214,281 to 215,237 _161 Pf6N2E2_162 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 215,296 to 216,849 _162 Pf6N2E2_163 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 216,846 to 217,823 _163 Pf6N2E2_164 - Ribose operon repressor, at 217,827 to 218,846 _164 Position (kb) 215 216 217Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 214.455 kb on + strand, within Pf6N2E2_161at 214.455 kb on + strand, within Pf6N2E2_161at 214.455 kb on + strand, within Pf6N2E2_161at 214.456 kb on - strand, within Pf6N2E2_161at 214.753 kb on - strand, within Pf6N2E2_161at 214.753 kb on - strand, within Pf6N2E2_161at 215.235 kb on + strandat 215.235 kb on + strandat 215.235 kb on + strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.240 kb on - strandat 215.240 kb on - strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.296 kb on - strandat 215.350 kb on + strandat 215.350 kb on + strandat 215.351 kb on - strandat 215.351 kb on - strandat 215.351 kb on - strandat 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 216.087 kb on + strand, within Pf6N2E2_162at 216.156 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.888 kb on + strandat 216.889 kb on - strandat 216.903 kb on + strandat 216.904 kb on - strandat 216.975 kb on + strand, within Pf6N2E2_163at 216.975 kb on + strand, within Pf6N2E2_163at 216.990 kb on - strand, within Pf6N2E2_163at 217.302 kb on + strand, within Pf6N2E2_163at 217.302 kb on + strand, within Pf6N2E2_163at 217.303 kb on - strand, within Pf6N2E2_163at 217.303 kb on - strand, within Pf6N2E2_163at 217.492 kb on - strand, within Pf6N2E2_163at 217.505 kb on - strand, within Pf6N2E2_163at 217.631 kb on + strand, within Pf6N2E2_163at 217.631 kb on + strand, within Pf6N2E2_163at 217.791 kb on + strandat 217.792 kb on - strandat 217.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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214,455 + Pf6N2E2_161 0.18 +0.4
214,455 + Pf6N2E2_161 0.18 +0.4
214,455 + Pf6N2E2_161 0.18 +0.4
214,456 - Pf6N2E2_161 0.18 -0.6
214,753 - Pf6N2E2_161 0.49 +0.4
214,753 - Pf6N2E2_161 0.49 +0.4
215,235 + +0.4
215,235 + -1.1
215,235 + +0.4
215,236 - +0.4
215,236 - -0.6
215,236 - -4.4
215,236 - -2.4
215,240 - -3.8
215,240 - -3.2
215,295 + -0.6
215,295 + +0.4
215,295 + -3.0
215,295 + -2.3
215,295 + -0.6
215,295 + -2.6
215,295 + -3.2
215,295 + +0.4
215,295 + -3.4
215,296 - -0.6
215,350 + -2.0
215,350 + -3.0
215,351 - -5.9
215,351 - -0.6
215,351 - -3.6
215,893 + Pf6N2E2_162 0.38 +0.4
215,893 + Pf6N2E2_162 0.38 -0.6
215,893 + Pf6N2E2_162 0.38 -2.8
215,893 + Pf6N2E2_162 0.38 -1.2
215,893 + Pf6N2E2_162 0.38 -2.4
215,893 + Pf6N2E2_162 0.38 -1.2
215,894 - Pf6N2E2_162 0.38 -0.6
215,894 - Pf6N2E2_162 0.38 +0.4
215,894 - Pf6N2E2_162 0.38 +0.4
215,894 - Pf6N2E2_162 0.38 -1.0
215,894 - Pf6N2E2_162 0.38 -0.6
215,989 + Pf6N2E2_162 0.45 +0.4
215,989 + Pf6N2E2_162 0.45 -4.2
215,989 + Pf6N2E2_162 0.45 +0.4
215,989 + Pf6N2E2_162 0.45 -3.0
215,990 - Pf6N2E2_162 0.45 -2.0
215,990 - Pf6N2E2_162 0.45 -1.6
215,990 - Pf6N2E2_162 0.45 -0.6
216,087 + Pf6N2E2_162 0.51 -0.6
216,156 + Pf6N2E2_162 0.55 -5.7
216,616 + Pf6N2E2_162 0.85 +0.4
216,616 + Pf6N2E2_162 0.85 +0.4
216,616 + Pf6N2E2_162 0.85 -3.6
216,616 + Pf6N2E2_162 0.85 -3.2
216,617 - Pf6N2E2_162 0.85 +0.4
216,617 - Pf6N2E2_162 0.85 -1.2
216,617 - Pf6N2E2_162 0.85 -3.7
216,617 - Pf6N2E2_162 0.85 +0.4
216,888 + +0.4
216,889 - -0.6
216,903 + +0.4
216,904 - -0.6
216,975 + Pf6N2E2_163 0.13 +0.4
216,975 + Pf6N2E2_163 0.13 +0.4
216,990 - Pf6N2E2_163 0.15 +0.4
217,302 + Pf6N2E2_163 0.47 +0.4
217,302 + Pf6N2E2_163 0.47 +0.4
217,303 - Pf6N2E2_163 0.47 +0.4
217,303 - Pf6N2E2_163 0.47 +0.4
217,492 - Pf6N2E2_163 0.66 -5.9
217,505 - Pf6N2E2_163 0.67 -2.0
217,631 + Pf6N2E2_163 0.80 -0.6
217,631 + Pf6N2E2_163 0.80 -2.0
217,791 + +0.4
217,792 - +0.4
217,847 - +0.4

Or see this region's nucleotide sequence