Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_161

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_159 and Pf6N2E2_160 are separated by 248 nucleotidesPf6N2E2_160 and Pf6N2E2_161 are separated by 133 nucleotidesPf6N2E2_161 and Pf6N2E2_162 are separated by 58 nucleotides Pf6N2E2_159 - DNA damage resistance protein (from data), at 213,204 to 213,452 _159 Pf6N2E2_160 - hypothetical protein, at 213,701 to 214,147 _160 Pf6N2E2_161 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 214,281 to 215,237 _161 Pf6N2E2_162 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 215,296 to 216,849 _162 Position (kb) 214 215 216Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 213.411 kb on - strand, within Pf6N2E2_159at 213.411 kb on - strand, within Pf6N2E2_159at 213.412 kb on + strand, within Pf6N2E2_159at 213.412 kb on + strand, within Pf6N2E2_159at 213.412 kb on + strand, within Pf6N2E2_159at 213.413 kb on - strand, within Pf6N2E2_159at 213.413 kb on - strand, within Pf6N2E2_159at 213.420 kb on + strand, within Pf6N2E2_159at 213.421 kb on - strand, within Pf6N2E2_159at 213.428 kb on + strandat 213.580 kb on + strandat 213.592 kb on + strandat 213.592 kb on + strandat 213.593 kb on - strandat 213.995 kb on + strand, within Pf6N2E2_160at 213.996 kb on - strand, within Pf6N2E2_160at 214.069 kb on - strand, within Pf6N2E2_160at 214.135 kb on + strandat 214.135 kb on + strandat 214.135 kb on + strandat 214.135 kb on + strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.136 kb on - strandat 214.197 kb on + strandat 214.198 kb on - strandat 214.202 kb on + strandat 214.202 kb on + strandat 214.202 kb on + strandat 214.203 kb on - strandat 214.203 kb on - strandat 214.257 kb on + strandat 214.257 kb on + strandat 214.257 kb on + strandat 214.258 kb on - strandat 214.258 kb on - strandat 214.264 kb on - strandat 214.264 kb on - strandat 214.455 kb on + strand, within Pf6N2E2_161at 214.455 kb on + strand, within Pf6N2E2_161at 214.455 kb on + strand, within Pf6N2E2_161at 214.456 kb on - strand, within Pf6N2E2_161at 214.753 kb on - strand, within Pf6N2E2_161at 214.753 kb on - strand, within Pf6N2E2_161at 215.235 kb on + strandat 215.235 kb on + strandat 215.235 kb on + strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.236 kb on - strandat 215.240 kb on - strandat 215.240 kb on - strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.296 kb on - strandat 215.350 kb on + strandat 215.350 kb on + strandat 215.351 kb on - strandat 215.351 kb on - strandat 215.351 kb on - strandat 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 216.087 kb on + strand, within Pf6N2E2_162at 216.156 kb on + strand, within Pf6N2E2_162

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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213,411 - Pf6N2E2_159 0.83 -1.1
213,411 - Pf6N2E2_159 0.83 -0.0
213,412 + Pf6N2E2_159 0.84 +0.4
213,412 + Pf6N2E2_159 0.84 +0.4
213,412 + Pf6N2E2_159 0.84 +0.4
213,413 - Pf6N2E2_159 0.84 +0.4
213,413 - Pf6N2E2_159 0.84 -0.6
213,420 + Pf6N2E2_159 0.87 -0.6
213,421 - Pf6N2E2_159 0.87 +0.4
213,428 + +0.4
213,580 + -0.7
213,592 + +0.4
213,592 + -0.6
213,593 - +0.4
213,995 + Pf6N2E2_160 0.66 +0.4
213,996 - Pf6N2E2_160 0.66 -0.5
214,069 - Pf6N2E2_160 0.82 +0.0
214,135 + +0.4
214,135 + -1.2
214,135 + -1.1
214,135 + -0.6
214,136 - +0.4
214,136 - +0.4
214,136 - +0.4
214,136 - -1.2
214,136 - -2.1
214,136 - -0.6
214,136 - +0.4
214,197 + +0.4
214,198 - -4.9
214,202 + -3.6
214,202 + -0.6
214,202 + -0.6
214,203 - -0.6
214,203 - -1.2
214,257 + +0.4
214,257 + +0.7
214,257 + -0.6
214,258 - -4.0
214,258 - -4.9
214,264 - -2.6
214,264 - +0.4
214,455 + Pf6N2E2_161 0.18 +0.4
214,455 + Pf6N2E2_161 0.18 +0.4
214,455 + Pf6N2E2_161 0.18 +0.4
214,456 - Pf6N2E2_161 0.18 -0.6
214,753 - Pf6N2E2_161 0.49 +0.4
214,753 - Pf6N2E2_161 0.49 +0.4
215,235 + +0.4
215,235 + -1.1
215,235 + +0.4
215,236 - +0.4
215,236 - -0.6
215,236 - -4.4
215,236 - -2.4
215,240 - -3.8
215,240 - -3.2
215,295 + -0.6
215,295 + +0.4
215,295 + -3.0
215,295 + -2.3
215,295 + -0.6
215,295 + -2.6
215,295 + -3.2
215,295 + +0.4
215,295 + -3.4
215,296 - -0.6
215,350 + -2.0
215,350 + -3.0
215,351 - -5.9
215,351 - -0.6
215,351 - -3.6
215,893 + Pf6N2E2_162 0.38 +0.4
215,893 + Pf6N2E2_162 0.38 -0.6
215,893 + Pf6N2E2_162 0.38 -2.8
215,893 + Pf6N2E2_162 0.38 -1.2
215,893 + Pf6N2E2_162 0.38 -2.4
215,893 + Pf6N2E2_162 0.38 -1.2
215,894 - Pf6N2E2_162 0.38 -0.6
215,894 - Pf6N2E2_162 0.38 +0.4
215,894 - Pf6N2E2_162 0.38 +0.4
215,894 - Pf6N2E2_162 0.38 -1.0
215,894 - Pf6N2E2_162 0.38 -0.6
215,989 + Pf6N2E2_162 0.45 +0.4
215,989 + Pf6N2E2_162 0.45 -4.2
215,989 + Pf6N2E2_162 0.45 +0.4
215,989 + Pf6N2E2_162 0.45 -3.0
215,990 - Pf6N2E2_162 0.45 -2.0
215,990 - Pf6N2E2_162 0.45 -1.6
215,990 - Pf6N2E2_162 0.45 -0.6
216,087 + Pf6N2E2_162 0.51 -0.6
216,156 + Pf6N2E2_162 0.55 -5.7

Or see this region's nucleotide sequence