Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1400

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
1,638,634	-		Pf6N2E2_1398	0.78	-1.4
1,638,657	-		Pf6N2E2_1398	0.83	-0.4
1,638,657	-		Pf6N2E2_1398	0.83	+1.2
1,638,668	+		Pf6N2E2_1398	0.85	-0.8
1,638,668	+		Pf6N2E2_1398	0.85	+0.2
1,638,792	+				+0.2
1,638,812	+				-0.2
1,638,812	+				+0.2
1,638,813	-				+0.2
1,638,813	-				+0.2
1,638,814	+				+0.2
1,639,097	+		Pf6N2E2_1399	0.44	+0.2
1,639,098	-		Pf6N2E2_1399	0.44	+0.2
1,639,098	-		Pf6N2E2_1399	0.44	+0.2
1,639,181	+		Pf6N2E2_1399	0.56	+0.2
1,639,181	+		Pf6N2E2_1399	0.56	-0.4
1,639,181	+		Pf6N2E2_1399	0.56	+0.2
1,639,181	+		Pf6N2E2_1399	0.56	-0.8
1,639,182	-		Pf6N2E2_1399	0.56	-0.8
1,639,182	-		Pf6N2E2_1399	0.56	-0.8
1,639,460	+				+2.7
1,639,460	+				+0.2
1,639,460	+				+0.9
1,639,753	-				+0.2
1,639,753	-				-1.8
1,639,881	+				-6.9
1,639,881	+				+0.2
1,639,881	+				+0.2
1,639,881	+				-0.8
1,639,881	+				-1.4
1,639,882	-				-1.4
1,639,882	-				+0.2
1,639,882	-				+0.2
1,639,882	-				+0.2
1,639,882	-				+0.2
1,639,882	-				-0.8
1,639,882	-				+0.2
1,639,957	+		Pf6N2E2_1400	0.12	-0.8
1,639,957	+		Pf6N2E2_1400	0.12	+0.2
1,639,957	+		Pf6N2E2_1400	0.12	+0.2
1,639,957	+		Pf6N2E2_1400	0.12	+0.2
1,639,958	-		Pf6N2E2_1400	0.12	-3.4
1,639,958	-		Pf6N2E2_1400	0.12	+0.2
1,639,958	-		Pf6N2E2_1400	0.12	-6.9
1,640,240	+		Pf6N2E2_1400	0.23	-0.8
1,640,240	+		Pf6N2E2_1400	0.23	-0.8
1,640,267	-		Pf6N2E2_1400	0.24	-2.6
1,640,473	-				-4.0
1,640,530	+		Pf6N2E2_1400	0.34	-3.8
1,640,531	-		Pf6N2E2_1400	0.34	+0.2
1,640,975	+		Pf6N2E2_1400	0.52	-1.4
1,640,976	-		Pf6N2E2_1400	0.52	+0.2
1,640,979	+		Pf6N2E2_1400	0.52	-1.8
1,640,979	+		Pf6N2E2_1400	0.52	-1.4
1,640,979	+		Pf6N2E2_1400	0.52	-0.8
1,640,979	+		Pf6N2E2_1400	0.52	+0.2
1,640,979	+		Pf6N2E2_1400	0.52	-1.8
1,640,979	+		Pf6N2E2_1400	0.52	+0.2
1,640,980	-		Pf6N2E2_1400	0.52	-3.4
1,640,980	-		Pf6N2E2_1400	0.52	-4.3
1,640,980	-		Pf6N2E2_1400	0.52	+0.2
1,640,994	+		Pf6N2E2_1400	0.52	-0.8
1,640,994	+		Pf6N2E2_1400	0.52	-1.4
1,640,995	-		Pf6N2E2_1400	0.52	+0.2
1,640,995	-		Pf6N2E2_1400	0.52	+0.2
1,640,995	-		Pf6N2E2_1400	0.52	-0.8
1,641,069	+		Pf6N2E2_1400	0.55	+0.2
1,641,069	+		Pf6N2E2_1400	0.55	+0.2
1,641,069	+		Pf6N2E2_1400	0.55	+0.2
1,641,069	+		Pf6N2E2_1400	0.55	+0.2
1,641,070	-		Pf6N2E2_1400	0.55	-0.8
1,641,150	+		Pf6N2E2_1400	0.58	-1.8
1,641,150	+		Pf6N2E2_1400	0.58	+0.2
1,641,150	+		Pf6N2E2_1400	0.58	+0.2
1,641,150	+		Pf6N2E2_1400	0.58	-3.6
1,641,150	-		Pf6N2E2_1400	0.58	-1.4
1,641,151	-		Pf6N2E2_1400	0.58	-3.6
1,641,163	-		Pf6N2E2_1400	0.59	-2.5
1,641,204	+		Pf6N2E2_1400	0.60	+0.2
1,641,661	+		Pf6N2E2_1400	0.78	+0.2
1,641,735	+		Pf6N2E2_1400	0.81	-0.8
1,641,736	-		Pf6N2E2_1400	0.81	+0.2
1,642,112	+				+0.2
1,642,262	+				+0.2
1,642,263	-				-1.1
1,642,288	+				+0.5
1,642,288	+				+0.2
1,642,289	-				+0.2
1,642,289	-				+0.2
1,642,511	-		Pf6N2E2_1401	0.26	+0.2
1,642,511	-		Pf6N2E2_1401	0.26	-1.3
1,642,511	-		Pf6N2E2_1401	0.26	-0.8
1,642,511	-		Pf6N2E2_1401	0.26	+0.2
1,642,511	-		Pf6N2E2_1401	0.26	-2.0
1,642,558	+		Pf6N2E2_1401	0.30	+0.2
1,642,558	+		Pf6N2E2_1401	0.30	+0.2
1,642,558	+		Pf6N2E2_1401	0.30	+0.2
1,642,558	+		Pf6N2E2_1401	0.30	-2.1
1,642,558	+		Pf6N2E2_1401	0.30	-2.6
1,642,558	+		Pf6N2E2_1401	0.30	-0.8
1,642,559	-		Pf6N2E2_1401	0.31	+0.2
1,642,559	-		Pf6N2E2_1401	0.31	-0.8
1,642,561	+		Pf6N2E2_1401	0.31	+0.2
1,642,648	+		Pf6N2E2_1401	0.38	-2.8
1,642,648	+		Pf6N2E2_1401	0.38	-0.8
1,642,649	-		Pf6N2E2_1401	0.38	+0.2
1,642,682	-		Pf6N2E2_1401	0.41	+0.2
1,642,829	-		Pf6N2E2_1401	0.54	+0.2
1,642,849	+		Pf6N2E2_1401	0.55	+0.2
1,642,850	-		Pf6N2E2_1401	0.56	-0.8
1,642,850	-		Pf6N2E2_1401	0.56	-0.8
1,643,230	+		Pf6N2E2_1401	0.88	+0.2
1,643,231	-		Pf6N2E2_1401	0.88	-6.8