Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_87

Experiment: Ying_Nucleobase14 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_85 and Pf6N2E2_86 are separated by 2 nucleotidesPf6N2E2_86 and Pf6N2E2_87 are separated by 570 nucleotidesPf6N2E2_87 and Pf6N2E2_88 are separated by 175 nucleotides Pf6N2E2_85 - FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin), at 129,986 to 130,294 _85 Pf6N2E2_86 - FIG022160: hypothetical toxin, at 130,297 to 130,467 _86 Pf6N2E2_87 - hypothetical protein, at 131,038 to 131,397 _87 Pf6N2E2_88 - hypothetical protein, at 131,573 to 131,746 _88 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1at 130.061 kb on + strand, within Pf6N2E2_85at 130.062 kb on - strand, within Pf6N2E2_85at 130.104 kb on + strand, within Pf6N2E2_85at 130.105 kb on - strand, within Pf6N2E2_85at 130.105 kb on - strand, within Pf6N2E2_85at 130.105 kb on - strand, within Pf6N2E2_85at 130.105 kb on - strand, within Pf6N2E2_85at 130.171 kb on - strand, within Pf6N2E2_85at 130.227 kb on + strand, within Pf6N2E2_85at 130.228 kb on - strand, within Pf6N2E2_85at 130.228 kb on - strand, within Pf6N2E2_85at 130.228 kb on - strand, within Pf6N2E2_85at 130.228 kb on - strand, within Pf6N2E2_85at 130.228 kb on - strand, within Pf6N2E2_85at 130.256 kb on + strand, within Pf6N2E2_85at 130.403 kb on + strand, within Pf6N2E2_86at 130.403 kb on + strand, within Pf6N2E2_86at 130.404 kb on - strand, within Pf6N2E2_86at 130.423 kb on + strand, within Pf6N2E2_86at 130.423 kb on + strand, within Pf6N2E2_86at 130.424 kb on - strand, within Pf6N2E2_86at 130.424 kb on - strand, within Pf6N2E2_86at 130.446 kb on + strand, within Pf6N2E2_86at 130.446 kb on + strand, within Pf6N2E2_86at 130.447 kb on - strand, within Pf6N2E2_86at 130.587 kb on + strandat 130.587 kb on + strandat 130.587 kb on + strandat 130.588 kb on - strandat 130.613 kb on - strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.744 kb on - strandat 130.754 kb on + strandat 130.754 kb on + strandat 130.754 kb on + strandat 130.755 kb on - strandat 130.755 kb on - strandat 130.755 kb on - strandat 130.764 kb on - strandat 130.812 kb on + strandat 130.812 kb on + strandat 130.812 kb on + strandat 130.812 kb on + strandat 130.813 kb on - strandat 130.875 kb on + strandat 130.892 kb on + strandat 130.892 kb on + strandat 131.004 kb on + strandat 131.097 kb on + strand, within Pf6N2E2_87at 131.242 kb on + strand, within Pf6N2E2_87at 131.243 kb on - strand, within Pf6N2E2_87at 131.284 kb on + strand, within Pf6N2E2_87at 131.284 kb on + strand, within Pf6N2E2_87at 131.284 kb on + strand, within Pf6N2E2_87at 131.285 kb on - strand, within Pf6N2E2_87at 131.285 kb on - strand, within Pf6N2E2_87at 131.285 kb on - strand, within Pf6N2E2_87at 131.285 kb on - strand, within Pf6N2E2_87at 131.395 kb on + strandat 131.618 kb on + strand, within Pf6N2E2_88at 131.687 kb on + strand, within Pf6N2E2_88at 131.739 kb on - strandat 131.739 kb on - strandat 131.742 kb on + strandat 131.742 kb on + strandat 131.742 kb on + strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.743 kb on - strandat 131.804 kb on + strandat 131.805 kb on - strandat 132.092 kb on - strandat 132.161 kb on + strandat 132.239 kb on - strandat 132.239 kb on - strandat 132.261 kb on + strandat 132.262 kb on - strandat 132.284 kb on + strandat 132.284 kb on + strandat 132.338 kb on + strandat 132.392 kb on + strandat 132.393 kb on - strandat 132.393 kb on - strandat 132.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
remove
130,061 + Pf6N2E2_85 0.24 -0.7
130,062 - Pf6N2E2_85 0.25 -0.6
130,104 + Pf6N2E2_85 0.38 -0.3
130,105 - Pf6N2E2_85 0.39 -0.7
130,105 - Pf6N2E2_85 0.39 +0.3
130,105 - Pf6N2E2_85 0.39 -1.3
130,105 - Pf6N2E2_85 0.39 +0.3
130,171 - Pf6N2E2_85 0.60 -1.3
130,227 + Pf6N2E2_85 0.78 +0.3
130,228 - Pf6N2E2_85 0.78 +0.3
130,228 - Pf6N2E2_85 0.78 -0.7
130,228 - Pf6N2E2_85 0.78 +0.3
130,228 - Pf6N2E2_85 0.78 -1.3
130,228 - Pf6N2E2_85 0.78 +0.3
130,256 + Pf6N2E2_85 0.87 +0.3
130,403 + Pf6N2E2_86 0.62 +0.3
130,403 + Pf6N2E2_86 0.62 +0.3
130,404 - Pf6N2E2_86 0.63 -0.8
130,423 + Pf6N2E2_86 0.74 -0.7
130,423 + Pf6N2E2_86 0.74 -0.7
130,424 - Pf6N2E2_86 0.74 +0.3
130,424 - Pf6N2E2_86 0.74 +0.3
130,446 + Pf6N2E2_86 0.87 +0.3
130,446 + Pf6N2E2_86 0.87 -0.7
130,447 - Pf6N2E2_86 0.88 +0.3
130,587 + -0.9
130,587 + +0.3
130,587 + -0.7
130,588 - +0.3
130,613 - +0.3
130,743 + -0.2
130,743 + -0.7
130,744 - +0.3
130,754 + +0.3
130,754 + +0.2
130,754 + +0.3
130,755 - -0.7
130,755 - -0.7
130,755 - +0.3
130,764 - -0.7
130,812 + -1.4
130,812 + +0.8
130,812 + +0.3
130,812 + -1.3
130,813 - +0.3
130,875 + +0.3
130,892 + +0.3
130,892 + +0.3
131,004 + +0.3
131,097 + Pf6N2E2_87 0.16 -1.3
131,242 + Pf6N2E2_87 0.57 -1.3
131,243 - Pf6N2E2_87 0.57 +0.3
131,284 + Pf6N2E2_87 0.68 -0.7
131,284 + Pf6N2E2_87 0.68 -3.2
131,284 + Pf6N2E2_87 0.68 -0.7
131,285 - Pf6N2E2_87 0.69 +0.3
131,285 - Pf6N2E2_87 0.69 -0.7
131,285 - Pf6N2E2_87 0.69 -1.7
131,285 - Pf6N2E2_87 0.69 +0.3
131,395 + +0.3
131,618 + Pf6N2E2_88 0.26 -0.2
131,687 + Pf6N2E2_88 0.66 -1.4
131,739 - -0.4
131,739 - +0.7
131,742 + +0.3
131,742 + +0.3
131,742 + -0.7
131,743 - +0.3
131,743 - -0.9
131,743 - +0.0
131,743 - +0.3
131,743 - +0.3
131,743 - +0.3
131,804 + +0.3
131,805 - +0.3
132,092 - -1.0
132,161 + -0.7
132,239 - -1.8
132,239 - +0.3
132,261 + -0.3
132,262 - -0.7
132,284 + +0.3
132,284 + -2.2
132,338 + +0.3
132,392 + +0.3
132,393 - -0.7
132,393 - +0.3
132,397 - -0.7

Or see this region's nucleotide sequence