Experiment: Ying_Nucleobase14 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_752 and Pf6N2E2_753 are separated by 157 nucleotides Pf6N2E2_753 and Pf6N2E2_754 are separated by 57 nucleotides Pf6N2E2_754 and Pf6N2E2_755 are separated by 24 nucleotides
Pf6N2E2_752 - Mobile element protein, at 861,275 to 862,543
_752
Pf6N2E2_753 - AFG1-like ATPase, at 862,701 to 863,822
_753
Pf6N2E2_754 - Histone acetyltransferase HPA2 and related acetyltransferases, at 863,880 to 864,374
_754
Pf6N2E2_755 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 864,399 to 866,138
_755
Position (kb) 862
863
864 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 862.668 kb on - strand at 862.668 kb on - strand at 862.668 kb on - strand at 862.668 kb on - strand at 862.682 kb on + strand at 862.683 kb on - strand at 863.032 kb on + strand, within Pf6N2E2_753 at 863.033 kb on - strand, within Pf6N2E2_753 at 863.138 kb on + strand, within Pf6N2E2_753 at 863.138 kb on + strand, within Pf6N2E2_753 at 863.138 kb on + strand, within Pf6N2E2_753 at 863.139 kb on - strand, within Pf6N2E2_753 at 863.139 kb on - strand, within Pf6N2E2_753 at 863.166 kb on + strand, within Pf6N2E2_753 at 863.167 kb on - strand, within Pf6N2E2_753 at 863.167 kb on - strand, within Pf6N2E2_753 at 863.223 kb on + strand, within Pf6N2E2_753 at 863.223 kb on + strand, within Pf6N2E2_753 at 863.223 kb on + strand, within Pf6N2E2_753 at 863.224 kb on - strand, within Pf6N2E2_753 at 863.224 kb on - strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.225 kb on + strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.226 kb on - strand, within Pf6N2E2_753 at 863.281 kb on + strand, within Pf6N2E2_753 at 863.282 kb on - strand, within Pf6N2E2_753 at 863.282 kb on - strand, within Pf6N2E2_753 at 863.282 kb on - strand, within Pf6N2E2_753 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.680 kb on - strand, within Pf6N2E2_753 at 863.680 kb on - strand, within Pf6N2E2_753 at 863.733 kb on + strand at 863.733 kb on + strand at 863.733 kb on + strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.745 kb on + strand at 863.828 kb on - strand at 863.905 kb on + strand at 863.905 kb on + strand at 863.905 kb on + strand at 863.919 kb on + strand at 863.919 kb on + strand at 863.919 kb on + strand at 864.297 kb on + strand, within Pf6N2E2_754 at 864.297 kb on + strand, within Pf6N2E2_754 at 864.348 kb on - strand at 864.604 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3 remove 862,668 - +0.2 862,668 - -1.0 862,668 - -0.9 862,668 - +0.2 862,682 + +0.2 862,683 - +0.2 863,032 + Pf6N2E2_753 0.30 -2.4 863,033 - Pf6N2E2_753 0.30 +0.2 863,138 + Pf6N2E2_753 0.39 +0.2 863,138 + Pf6N2E2_753 0.39 +0.2 863,138 + Pf6N2E2_753 0.39 +0.2 863,139 - Pf6N2E2_753 0.39 +0.2 863,139 - Pf6N2E2_753 0.39 +0.9 863,166 + Pf6N2E2_753 0.41 -0.9 863,167 - Pf6N2E2_753 0.42 +0.2 863,167 - Pf6N2E2_753 0.42 -0.8 863,223 + Pf6N2E2_753 0.47 -2.1 863,223 + Pf6N2E2_753 0.47 -0.4 863,223 + Pf6N2E2_753 0.47 -1.8 863,224 - Pf6N2E2_753 0.47 -1.4 863,224 - Pf6N2E2_753 0.47 -0.5 863,225 + Pf6N2E2_753 0.47 -2.4 863,225 + Pf6N2E2_753 0.47 +0.2 863,225 + Pf6N2E2_753 0.47 +0.2 863,225 + Pf6N2E2_753 0.47 +0.2 863,225 + Pf6N2E2_753 0.47 +0.2 863,225 + Pf6N2E2_753 0.47 +0.2 863,226 - Pf6N2E2_753 0.47 +0.2 863,226 - Pf6N2E2_753 0.47 -0.8 863,226 - Pf6N2E2_753 0.47 -0.8 863,226 - Pf6N2E2_753 0.47 +0.2 863,226 - Pf6N2E2_753 0.47 -0.8 863,226 - Pf6N2E2_753 0.47 +0.2 863,226 - Pf6N2E2_753 0.47 -1.6 863,226 - Pf6N2E2_753 0.47 -3.0 863,281 + Pf6N2E2_753 0.52 -1.4 863,282 - Pf6N2E2_753 0.52 -1.4 863,282 - Pf6N2E2_753 0.52 +0.2 863,282 - Pf6N2E2_753 0.52 +0.2 863,679 + Pf6N2E2_753 0.87 -2.3 863,679 + Pf6N2E2_753 0.87 -4.4 863,679 + Pf6N2E2_753 0.87 -0.8 863,680 - Pf6N2E2_753 0.87 +0.2 863,680 - Pf6N2E2_753 0.87 +0.2 863,733 + -3.6 863,733 + -2.6 863,733 + -1.8 863,734 - +0.2 863,734 - +0.2 863,734 - -0.3 863,734 - +0.2 863,745 + +0.2 863,828 - +0.2 863,905 + +0.2 863,905 + -2.1 863,905 + -0.8 863,919 + +0.2 863,919 + +0.2 863,919 + +0.2 864,297 + Pf6N2E2_754 0.84 -1.4 864,297 + Pf6N2E2_754 0.84 -2.1 864,348 - +0.2 864,604 + Pf6N2E2_755 0.12 +0.2 864,688 + Pf6N2E2_755 0.17 -0.8 864,688 + Pf6N2E2_755 0.17 +0.2 864,688 + Pf6N2E2_755 0.17 -0.8 864,688 + Pf6N2E2_755 0.17 +0.2 864,689 - Pf6N2E2_755 0.17 -0.8 864,689 - Pf6N2E2_755 0.17 +0.2 864,689 - Pf6N2E2_755 0.17 +1.2 864,776 - Pf6N2E2_755 0.22 +0.2 864,776 - Pf6N2E2_755 0.22 +0.2 864,776 - Pf6N2E2_755 0.22 +0.2 864,776 - Pf6N2E2_755 0.22 -0.2 864,776 - Pf6N2E2_755 0.22 -1.1
Or see this region's nucleotide sequence