Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5403

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
6,207,722	-		Pf6N2E2_5402	0.21	-2.0
6,207,879	+		Pf6N2E2_5402	0.36	+0.4
6,207,879	+		Pf6N2E2_5402	0.36	-1.2
6,207,880	-		Pf6N2E2_5402	0.36	-0.9
6,207,880	-		Pf6N2E2_5402	0.36	+0.4
6,207,882	+		Pf6N2E2_5402	0.37	+0.4
6,207,882	+		Pf6N2E2_5402	0.37	-0.6
6,207,882	+		Pf6N2E2_5402	0.37	-3.8
6,207,883	-		Pf6N2E2_5402	0.37	-1.0
6,207,883	-		Pf6N2E2_5402	0.37	+1.7
6,207,883	-		Pf6N2E2_5402	0.37	+0.4
6,207,999	+		Pf6N2E2_5402	0.48	-0.6
6,208,000	-		Pf6N2E2_5402	0.48	-1.2
6,208,000	-		Pf6N2E2_5402	0.48	+0.4
6,208,024	-		Pf6N2E2_5402	0.50	+0.4
6,208,152	+		Pf6N2E2_5402	0.63	-1.2
6,208,153	-		Pf6N2E2_5402	0.63	+0.4
6,208,153	-		Pf6N2E2_5402	0.63	-1.2
6,208,153	-		Pf6N2E2_5402	0.63	+0.4
6,208,337	+		Pf6N2E2_5402	0.81	+0.4
6,208,337	+		Pf6N2E2_5402	0.81	-0.6
6,208,338	-		Pf6N2E2_5402	0.81	-1.0
6,208,338	-		Pf6N2E2_5402	0.81	+0.8
6,208,359	+		Pf6N2E2_5402	0.83	-1.4
6,208,360	-		Pf6N2E2_5402	0.83	+0.4
6,208,422	+		Pf6N2E2_5402	0.89	-0.6
6,208,422	+		Pf6N2E2_5402	0.89	-0.9
6,208,542	+				-0.6
6,208,542	+				-0.6
6,208,542	+				+0.4
6,208,543	-				+0.4
6,208,625	-				+0.4
6,208,625	-				-0.6
6,208,625	-				-0.6
6,208,625	-				+0.1
6,208,625	-				-1.2
6,208,625	-				-1.0
6,208,668	+				-0.6
6,208,669	-				-0.6
6,208,669	-				-1.2
6,208,669	-				-1.2
6,208,821	-		Pf6N2E2_5403	0.15	+0.4
6,208,838	+		Pf6N2E2_5403	0.16	-1.6
6,208,838	+		Pf6N2E2_5403	0.16	+0.4
6,208,838	+		Pf6N2E2_5403	0.16	+0.4
6,208,838	+		Pf6N2E2_5403	0.16	-0.6
6,208,839	-		Pf6N2E2_5403	0.16	+0.4
6,208,839	-		Pf6N2E2_5403	0.16	-1.2
6,208,839	-		Pf6N2E2_5403	0.16	+0.4
6,208,839	-		Pf6N2E2_5403	0.16	+0.4
6,208,839	-		Pf6N2E2_5403	0.16	-1.2
6,208,979	+		Pf6N2E2_5403	0.29	-1.6
6,208,979	+		Pf6N2E2_5403	0.29	+0.4
6,208,979	+		Pf6N2E2_5403	0.29	-0.6
6,208,979	+		Pf6N2E2_5403	0.29	-0.8
6,208,980	-		Pf6N2E2_5403	0.29	-1.6
6,208,980	-		Pf6N2E2_5403	0.29	-0.5
6,208,980	-		Pf6N2E2_5403	0.29	-1.6
6,208,980	-		Pf6N2E2_5403	0.29	-0.6
6,208,996	+		Pf6N2E2_5403	0.30	-0.6
6,209,000	-		Pf6N2E2_5403	0.31	+0.4
6,209,041	-		Pf6N2E2_5403	0.34	+0.4
6,209,075	-		Pf6N2E2_5403	0.37	+0.4
6,209,166	+		Pf6N2E2_5403	0.45	-0.8
6,209,167	-		Pf6N2E2_5403	0.45	+0.4
6,209,167	-		Pf6N2E2_5403	0.45	+0.4
6,209,167	-		Pf6N2E2_5403	0.45	+0.7
6,209,167	-		Pf6N2E2_5403	0.45	+0.4
6,209,167	-		Pf6N2E2_5403	0.45	+0.4
6,209,167	-		Pf6N2E2_5403	0.45	-1.6
6,209,245	+		Pf6N2E2_5403	0.52	-3.6
6,209,246	-		Pf6N2E2_5403	0.52	-0.6
6,209,246	-		Pf6N2E2_5403	0.52	+0.4
6,209,246	-		Pf6N2E2_5403	0.52	-1.1
6,209,411	+		Pf6N2E2_5403	0.67	-0.7
6,209,412	-		Pf6N2E2_5403	0.67	-0.6
6,209,412	-		Pf6N2E2_5403	0.67	+0.4
6,209,577	-		Pf6N2E2_5403	0.82	+0.4
6,209,577	-		Pf6N2E2_5403	0.82	+0.4
6,209,709	-				+0.4
6,209,709	-				+0.4
6,209,709	-				+0.4
6,209,722	+				+0.4
6,209,723	-				+0.4
6,209,723	-				-0.6
6,209,750	+				+0.4
6,209,804	+				-0.3
6,209,805	-				+0.3
6,209,916	+		Pf6N2E2_5404	0.11	-0.7
6,209,916	+		Pf6N2E2_5404	0.11	+0.3
6,209,916	+		Pf6N2E2_5404	0.11	-1.0
6,209,917	-		Pf6N2E2_5404	0.11	+0.3
6,209,917	-		Pf6N2E2_5404	0.11	+0.3
6,209,925	+		Pf6N2E2_5404	0.12	-0.2
6,209,925	+		Pf6N2E2_5404	0.12	+0.3
6,209,926	-		Pf6N2E2_5404	0.12	-1.0
6,209,926	-		Pf6N2E2_5404	0.12	-1.2
6,210,054	+		Pf6N2E2_5404	0.24	-0.9
6,210,054	+		Pf6N2E2_5404	0.24	-0.9
6,210,054	+		Pf6N2E2_5404	0.24	-0.7
6,210,055	-		Pf6N2E2_5404	0.24	-1.1
6,210,055	-		Pf6N2E2_5404	0.24	-1.7
6,210,060	+		Pf6N2E2_5404	0.24	-1.2
6,210,064	-		Pf6N2E2_5404	0.25	-2.1
6,210,162	+		Pf6N2E2_5404	0.34	-0.7
6,210,162	+		Pf6N2E2_5404	0.34	-0.7
6,210,162	+		Pf6N2E2_5404	0.34	-2.0
6,210,163	-		Pf6N2E2_5404	0.34	+0.3
6,210,522	+		Pf6N2E2_5404	0.66	+0.3
6,210,523	-		Pf6N2E2_5404	0.66	+0.3
6,210,538	+		Pf6N2E2_5404	0.68	-0.2
6,210,539	-		Pf6N2E2_5404	0.68	-2.7
6,210,539	-		Pf6N2E2_5404	0.68	+0.3
6,210,539	-		Pf6N2E2_5404	0.68	+0.3
6,210,573	+		Pf6N2E2_5404	0.71	-0.7
6,210,696	-		Pf6N2E2_5404	0.82	+0.3