Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5054

Experiment: Ying_Nucleobase14 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5053 and Pf6N2E2_5054 are separated by 15 nucleotidesPf6N2E2_5054 and Pf6N2E2_5055 are separated by 252 nucleotides Pf6N2E2_5053 - putative exported protein, at 5,827,684 to 5,828,616 _5053 Pf6N2E2_5054 - YpfJ protein, zinc metalloprotease superfamily, at 5,828,632 to 5,829,516 _5054 Pf6N2E2_5055 - membrane protein, putative, at 5,829,769 to 5,830,647 _5055 Position (kb) 5828 5829 5830Strain fitness (log2 ratio) -2 -1 0 1at 5827.658 kb on + strandat 5827.659 kb on - strandat 5827.805 kb on + strand, within Pf6N2E2_5053at 5827.806 kb on - strand, within Pf6N2E2_5053at 5827.916 kb on + strand, within Pf6N2E2_5053at 5827.916 kb on + strand, within Pf6N2E2_5053at 5827.916 kb on + strand, within Pf6N2E2_5053at 5827.917 kb on - strand, within Pf6N2E2_5053at 5827.937 kb on + strand, within Pf6N2E2_5053at 5827.937 kb on + strand, within Pf6N2E2_5053at 5827.937 kb on + strand, within Pf6N2E2_5053at 5827.937 kb on + strand, within Pf6N2E2_5053at 5827.937 kb on + strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5827.938 kb on - strand, within Pf6N2E2_5053at 5828.000 kb on + strand, within Pf6N2E2_5053at 5828.066 kb on + strand, within Pf6N2E2_5053at 5828.066 kb on + strand, within Pf6N2E2_5053at 5828.066 kb on + strand, within Pf6N2E2_5053at 5828.066 kb on + strand, within Pf6N2E2_5053at 5828.067 kb on - strand, within Pf6N2E2_5053at 5828.072 kb on + strand, within Pf6N2E2_5053at 5828.242 kb on + strand, within Pf6N2E2_5053at 5828.435 kb on + strand, within Pf6N2E2_5053at 5828.435 kb on + strand, within Pf6N2E2_5053at 5828.436 kb on - strand, within Pf6N2E2_5053at 5828.436 kb on - strand, within Pf6N2E2_5053at 5828.507 kb on - strand, within Pf6N2E2_5053at 5828.633 kb on + strandat 5828.634 kb on - strandat 5828.634 kb on - strandat 5828.902 kb on + strand, within Pf6N2E2_5054at 5828.903 kb on - strand, within Pf6N2E2_5054at 5828.903 kb on - strand, within Pf6N2E2_5054at 5829.018 kb on - strand, within Pf6N2E2_5054at 5829.086 kb on + strand, within Pf6N2E2_5054at 5829.086 kb on + strand, within Pf6N2E2_5054at 5829.087 kb on - strand, within Pf6N2E2_5054at 5829.110 kb on + strand, within Pf6N2E2_5054at 5829.110 kb on + strand, within Pf6N2E2_5054at 5829.110 kb on + strand, within Pf6N2E2_5054at 5829.111 kb on - strand, within Pf6N2E2_5054at 5829.111 kb on - strand, within Pf6N2E2_5054at 5829.111 kb on - strand, within Pf6N2E2_5054at 5829.111 kb on - strand, within Pf6N2E2_5054at 5829.512 kb on - strandat 5829.577 kb on + strandat 5829.578 kb on - strandat 5829.676 kb on - strandat 5829.702 kb on - strandat 5829.719 kb on - strandat 5829.743 kb on + strandat 5829.743 kb on + strandat 5829.744 kb on - strandat 5829.744 kb on - strandat 5829.744 kb on - strandat 5829.744 kb on - strandat 5829.744 kb on - strandat 5829.826 kb on - strandat 5829.866 kb on + strand, within Pf6N2E2_5055at 5829.866 kb on + strand, within Pf6N2E2_5055at 5829.874 kb on + strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.875 kb on - strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.919 kb on + strand, within Pf6N2E2_5055at 5829.920 kb on - strand, within Pf6N2E2_5055at 5829.920 kb on - strand, within Pf6N2E2_5055at 5829.980 kb on + strand, within Pf6N2E2_5055at 5829.981 kb on - strand, within Pf6N2E2_5055at 5829.981 kb on - strand, within Pf6N2E2_5055at 5829.984 kb on + strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5829.985 kb on - strand, within Pf6N2E2_5055at 5830.189 kb on - strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.279 kb on + strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.280 kb on - strand, within Pf6N2E2_5055at 5830.282 kb on - strand, within Pf6N2E2_5055

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
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5,827,658 + -0.8
5,827,659 - -1.2
5,827,805 + Pf6N2E2_5053 0.13 -1.2
5,827,806 - Pf6N2E2_5053 0.13 -0.8
5,827,916 + Pf6N2E2_5053 0.25 -0.5
5,827,916 + Pf6N2E2_5053 0.25 -0.4
5,827,916 + Pf6N2E2_5053 0.25 -0.8
5,827,917 - Pf6N2E2_5053 0.25 +0.4
5,827,937 + Pf6N2E2_5053 0.27 -1.1
5,827,937 + Pf6N2E2_5053 0.27 -0.6
5,827,937 + Pf6N2E2_5053 0.27 +0.4
5,827,937 + Pf6N2E2_5053 0.27 +0.4
5,827,937 + Pf6N2E2_5053 0.27 +1.7
5,827,938 - Pf6N2E2_5053 0.27 -1.2
5,827,938 - Pf6N2E2_5053 0.27 +0.4
5,827,938 - Pf6N2E2_5053 0.27 -0.1
5,827,938 - Pf6N2E2_5053 0.27 +0.4
5,827,938 - Pf6N2E2_5053 0.27 +0.4
5,827,938 - Pf6N2E2_5053 0.27 -0.6
5,827,938 - Pf6N2E2_5053 0.27 -0.6
5,827,938 - Pf6N2E2_5053 0.27 -0.6
5,827,938 - Pf6N2E2_5053 0.27 -0.6
5,827,938 - Pf6N2E2_5053 0.27 -0.3
5,827,938 - Pf6N2E2_5053 0.27 +0.4
5,828,000 + Pf6N2E2_5053 0.34 -1.2
5,828,066 + Pf6N2E2_5053 0.41 +0.4
5,828,066 + Pf6N2E2_5053 0.41 -2.3
5,828,066 + Pf6N2E2_5053 0.41 -2.2
5,828,066 + Pf6N2E2_5053 0.41 +0.4
5,828,067 - Pf6N2E2_5053 0.41 -0.6
5,828,072 + Pf6N2E2_5053 0.42 -0.8
5,828,242 + Pf6N2E2_5053 0.60 -1.6
5,828,435 + Pf6N2E2_5053 0.80 +0.4
5,828,435 + Pf6N2E2_5053 0.80 +0.4
5,828,436 - Pf6N2E2_5053 0.81 -2.2
5,828,436 - Pf6N2E2_5053 0.81 -1.2
5,828,507 - Pf6N2E2_5053 0.88 -1.8
5,828,633 + -0.4
5,828,634 - +0.4
5,828,634 - -1.2
5,828,902 + Pf6N2E2_5054 0.31 +0.4
5,828,903 - Pf6N2E2_5054 0.31 -0.6
5,828,903 - Pf6N2E2_5054 0.31 +0.4
5,829,018 - Pf6N2E2_5054 0.44 -0.6
5,829,086 + Pf6N2E2_5054 0.51 -1.5
5,829,086 + Pf6N2E2_5054 0.51 -0.6
5,829,087 - Pf6N2E2_5054 0.51 -0.6
5,829,110 + Pf6N2E2_5054 0.54 -0.3
5,829,110 + Pf6N2E2_5054 0.54 -0.6
5,829,110 + Pf6N2E2_5054 0.54 -0.7
5,829,111 - Pf6N2E2_5054 0.54 +0.4
5,829,111 - Pf6N2E2_5054 0.54 -0.4
5,829,111 - Pf6N2E2_5054 0.54 +0.4
5,829,111 - Pf6N2E2_5054 0.54 -0.6
5,829,512 - +0.4
5,829,577 + +0.0
5,829,578 - -0.6
5,829,676 - +0.4
5,829,702 - -0.6
5,829,719 - +0.4
5,829,743 + -0.6
5,829,743 + +0.4
5,829,744 - -0.9
5,829,744 - -0.5
5,829,744 - -0.6
5,829,744 - +0.4
5,829,744 - -1.2
5,829,826 - +0.4
5,829,866 + Pf6N2E2_5055 0.11 -0.2
5,829,866 + Pf6N2E2_5055 0.11 -0.6
5,829,874 + Pf6N2E2_5055 0.12 +0.4
5,829,875 - Pf6N2E2_5055 0.12 +0.4
5,829,875 - Pf6N2E2_5055 0.12 +0.4
5,829,875 - Pf6N2E2_5055 0.12 -0.6
5,829,875 - Pf6N2E2_5055 0.12 +0.4
5,829,875 - Pf6N2E2_5055 0.12 +0.4
5,829,875 - Pf6N2E2_5055 0.12 -0.6
5,829,919 + Pf6N2E2_5055 0.17 -1.2
5,829,919 + Pf6N2E2_5055 0.17 +0.4
5,829,919 + Pf6N2E2_5055 0.17 -1.6
5,829,919 + Pf6N2E2_5055 0.17 -1.2
5,829,919 + Pf6N2E2_5055 0.17 +0.4
5,829,919 + Pf6N2E2_5055 0.17 +0.4
5,829,920 - Pf6N2E2_5055 0.17 +0.4
5,829,920 - Pf6N2E2_5055 0.17 -0.6
5,829,980 + Pf6N2E2_5055 0.24 +0.7
5,829,981 - Pf6N2E2_5055 0.24 +0.2
5,829,981 - Pf6N2E2_5055 0.24 +0.4
5,829,984 + Pf6N2E2_5055 0.24 -0.5
5,829,985 - Pf6N2E2_5055 0.25 +0.4
5,829,985 - Pf6N2E2_5055 0.25 +1.4
5,829,985 - Pf6N2E2_5055 0.25 -1.2
5,830,189 - Pf6N2E2_5055 0.48 +0.4
5,830,279 + Pf6N2E2_5055 0.58 +0.4
5,830,279 + Pf6N2E2_5055 0.58 +0.4
5,830,279 + Pf6N2E2_5055 0.58 +0.4
5,830,279 + Pf6N2E2_5055 0.58 +0.4
5,830,280 - Pf6N2E2_5055 0.58 -1.2
5,830,280 - Pf6N2E2_5055 0.58 -1.6
5,830,280 - Pf6N2E2_5055 0.58 -0.9
5,830,280 - Pf6N2E2_5055 0.58 +0.4
5,830,280 - Pf6N2E2_5055 0.58 +0.4
5,830,282 - Pf6N2E2_5055 0.58 -0.3

Or see this region's nucleotide sequence