Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4643

Experiment: Ying_Nucleobase14 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4642 and Pf6N2E2_4643 are separated by 38 nucleotidesPf6N2E2_4643 and Pf6N2E2_4644 are separated by 459 nucleotides Pf6N2E2_4642 - Putative transport, at 5,371,084 to 5,371,965 _4642 Pf6N2E2_4643 - EXOU, at 5,372,004 to 5,373,731 _4643 Pf6N2E2_4644 - Arabinose efflux permease, at 5,374,191 to 5,375,351 _4644 Position (kb) 5372 5373 5374Strain fitness (log2 ratio) -2 -1 0 1at 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.052 kb on + strandat 5371.053 kb on - strandat 5371.053 kb on - strandat 5371.053 kb on - strandat 5371.056 kb on + strandat 5371.056 kb on + strandat 5371.056 kb on + strandat 5371.056 kb on + strandat 5371.056 kb on + strandat 5371.057 kb on - strandat 5371.057 kb on - strandat 5371.057 kb on - strandat 5371.083 kb on + strandat 5371.083 kb on + strandat 5371.084 kb on - strandat 5371.200 kb on + strand, within Pf6N2E2_4642at 5371.201 kb on - strand, within Pf6N2E2_4642at 5371.522 kb on + strand, within Pf6N2E2_4642at 5371.522 kb on + strand, within Pf6N2E2_4642at 5371.522 kb on + strand, within Pf6N2E2_4642at 5371.522 kb on + strand, within Pf6N2E2_4642at 5371.523 kb on - strand, within Pf6N2E2_4642at 5371.523 kb on - strand, within Pf6N2E2_4642at 5371.523 kb on - strand, within Pf6N2E2_4642at 5371.523 kb on - strand, within Pf6N2E2_4642at 5371.713 kb on + strand, within Pf6N2E2_4642at 5371.713 kb on + strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.714 kb on - strand, within Pf6N2E2_4642at 5371.717 kb on + strand, within Pf6N2E2_4642at 5371.717 kb on + strand, within Pf6N2E2_4642at 5371.718 kb on - strand, within Pf6N2E2_4642at 5371.718 kb on - strand, within Pf6N2E2_4642at 5371.774 kb on + strand, within Pf6N2E2_4642at 5371.774 kb on + strand, within Pf6N2E2_4642at 5371.774 kb on + strand, within Pf6N2E2_4642at 5371.866 kb on + strand, within Pf6N2E2_4642at 5371.867 kb on - strand, within Pf6N2E2_4642at 5371.923 kb on + strandat 5371.923 kb on + strandat 5371.923 kb on + strandat 5371.923 kb on + strandat 5371.923 kb on + strandat 5371.924 kb on - strandat 5371.924 kb on - strandat 5371.924 kb on - strandat 5371.981 kb on + strandat 5371.981 kb on + strandat 5371.981 kb on + strandat 5372.080 kb on + strandat 5372.081 kb on - strandat 5372.131 kb on - strandat 5372.131 kb on - strandat 5372.131 kb on - strandat 5372.131 kb on - strandat 5372.207 kb on + strand, within Pf6N2E2_4643at 5372.244 kb on + strand, within Pf6N2E2_4643at 5372.244 kb on + strand, within Pf6N2E2_4643at 5372.244 kb on + strand, within Pf6N2E2_4643at 5372.245 kb on - strand, within Pf6N2E2_4643at 5372.245 kb on - strand, within Pf6N2E2_4643at 5372.245 kb on - strand, within Pf6N2E2_4643at 5372.535 kb on + strand, within Pf6N2E2_4643at 5372.535 kb on + strand, within Pf6N2E2_4643at 5372.535 kb on + strand, within Pf6N2E2_4643at 5372.535 kb on + strand, within Pf6N2E2_4643at 5372.536 kb on - strand, within Pf6N2E2_4643at 5372.616 kb on + strand, within Pf6N2E2_4643at 5372.616 kb on + strand, within Pf6N2E2_4643at 5372.616 kb on + strand, within Pf6N2E2_4643at 5372.616 kb on + strand, within Pf6N2E2_4643at 5372.617 kb on - strand, within Pf6N2E2_4643at 5372.617 kb on - strand, within Pf6N2E2_4643at 5372.617 kb on - strand, within Pf6N2E2_4643at 5372.617 kb on - strand, within Pf6N2E2_4643at 5372.625 kb on + strand, within Pf6N2E2_4643at 5372.677 kb on + strand, within Pf6N2E2_4643at 5372.677 kb on + strand, within Pf6N2E2_4643at 5372.678 kb on - strand, within Pf6N2E2_4643at 5372.682 kb on + strand, within Pf6N2E2_4643at 5372.768 kb on + strand, within Pf6N2E2_4643at 5372.768 kb on + strand, within Pf6N2E2_4643at 5372.768 kb on + strand, within Pf6N2E2_4643at 5372.803 kb on + strand, within Pf6N2E2_4643at 5372.803 kb on + strand, within Pf6N2E2_4643at 5372.804 kb on - strand, within Pf6N2E2_4643at 5372.804 kb on - strand, within Pf6N2E2_4643at 5372.804 kb on - strand, within Pf6N2E2_4643at 5372.804 kb on - strand, within Pf6N2E2_4643at 5372.804 kb on - strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.840 kb on + strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.841 kb on - strand, within Pf6N2E2_4643at 5372.912 kb on + strand, within Pf6N2E2_4643at 5372.976 kb on + strand, within Pf6N2E2_4643at 5372.977 kb on - strand, within Pf6N2E2_4643at 5373.030 kb on - strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.031 kb on + strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.032 kb on - strand, within Pf6N2E2_4643at 5373.035 kb on + strand, within Pf6N2E2_4643at 5373.050 kb on + strand, within Pf6N2E2_4643at 5373.050 kb on + strand, within Pf6N2E2_4643at 5373.050 kb on + strand, within Pf6N2E2_4643at 5373.051 kb on - strand, within Pf6N2E2_4643at 5373.051 kb on - strand, within Pf6N2E2_4643at 5373.255 kb on + strand, within Pf6N2E2_4643at 5373.346 kb on - strand, within Pf6N2E2_4643at 5373.346 kb on - strand, within Pf6N2E2_4643at 5373.391 kb on - strand, within Pf6N2E2_4643at 5373.435 kb on + strand, within Pf6N2E2_4643at 5373.491 kb on + strand, within Pf6N2E2_4643at 5373.630 kb on + strandat 5373.678 kb on + strandat 5373.678 kb on + strandat 5373.679 kb on - strandat 5373.679 kb on - strandat 5373.679 kb on - strandat 5373.762 kb on + strandat 5373.762 kb on + strandat 5373.762 kb on + strandat 5373.762 kb on + strandat 5373.763 kb on - strandat 5373.763 kb on - strandat 5373.763 kb on - strandat 5373.774 kb on - strandat 5373.786 kb on - strandat 5373.786 kb on - strandat 5373.786 kb on - strandat 5373.897 kb on + strandat 5373.898 kb on - strandat 5373.898 kb on - strandat 5373.898 kb on - strandat 5373.943 kb on - strandat 5373.964 kb on + strandat 5373.988 kb on + strandat 5373.988 kb on + strandat 5373.996 kb on - strandat 5373.996 kb on - strandat 5373.996 kb on - strandat 5374.083 kb on + strandat 5374.109 kb on - strandat 5374.141 kb on - strandat 5374.229 kb on + strandat 5374.230 kb on - strandat 5374.230 kb on - strandat 5374.230 kb on - strandat 5374.230 kb on - strandat 5374.548 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.690 kb on + strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.691 kb on - strand, within Pf6N2E2_4644at 5374.699 kb on - strand, within Pf6N2E2_4644

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
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5,371,052 + +0.4
5,371,052 + -1.2
5,371,052 + -1.2
5,371,052 + +0.4
5,371,052 + -0.3
5,371,052 + -0.8
5,371,052 + +0.4
5,371,053 - -0.3
5,371,053 - -0.8
5,371,053 - -1.2
5,371,056 + -1.2
5,371,056 + -0.6
5,371,056 + -1.4
5,371,056 + -0.6
5,371,056 + -1.7
5,371,057 - +0.4
5,371,057 - -0.6
5,371,057 - -0.6
5,371,083 + -1.2
5,371,083 + -1.2
5,371,084 - +0.4
5,371,200 + Pf6N2E2_4642 0.13 +0.4
5,371,201 - Pf6N2E2_4642 0.13 +0.4
5,371,522 + Pf6N2E2_4642 0.50 +0.4
5,371,522 + Pf6N2E2_4642 0.50 +0.4
5,371,522 + Pf6N2E2_4642 0.50 -0.6
5,371,522 + Pf6N2E2_4642 0.50 -0.7
5,371,523 - Pf6N2E2_4642 0.50 -0.4
5,371,523 - Pf6N2E2_4642 0.50 -0.8
5,371,523 - Pf6N2E2_4642 0.50 -0.1
5,371,523 - Pf6N2E2_4642 0.50 -0.5
5,371,713 + Pf6N2E2_4642 0.71 -0.2
5,371,713 + Pf6N2E2_4642 0.71 -1.6
5,371,714 - Pf6N2E2_4642 0.71 +0.4
5,371,714 - Pf6N2E2_4642 0.71 +0.4
5,371,714 - Pf6N2E2_4642 0.71 +0.4
5,371,714 - Pf6N2E2_4642 0.71 -0.6
5,371,714 - Pf6N2E2_4642 0.71 -0.6
5,371,714 - Pf6N2E2_4642 0.71 -0.6
5,371,714 - Pf6N2E2_4642 0.71 -0.6
5,371,717 + Pf6N2E2_4642 0.72 -1.6
5,371,717 + Pf6N2E2_4642 0.72 -1.2
5,371,718 - Pf6N2E2_4642 0.72 +0.4
5,371,718 - Pf6N2E2_4642 0.72 -0.6
5,371,774 + Pf6N2E2_4642 0.78 -0.6
5,371,774 + Pf6N2E2_4642 0.78 -0.4
5,371,774 + Pf6N2E2_4642 0.78 +0.4
5,371,866 + Pf6N2E2_4642 0.89 +0.4
5,371,867 - Pf6N2E2_4642 0.89 -0.8
5,371,923 + -0.9
5,371,923 + -0.6
5,371,923 + -0.6
5,371,923 + +0.4
5,371,923 + -0.6
5,371,924 - -0.3
5,371,924 - +0.4
5,371,924 - -1.2
5,371,981 + -1.2
5,371,981 + -0.6
5,371,981 + -0.6
5,372,080 + -0.3
5,372,081 - -1.6
5,372,131 - -1.2
5,372,131 - -1.6
5,372,131 - +0.4
5,372,131 - +0.4
5,372,207 + Pf6N2E2_4643 0.12 -1.2
5,372,244 + Pf6N2E2_4643 0.14 +0.4
5,372,244 + Pf6N2E2_4643 0.14 -0.4
5,372,244 + Pf6N2E2_4643 0.14 -0.3
5,372,245 - Pf6N2E2_4643 0.14 -1.9
5,372,245 - Pf6N2E2_4643 0.14 +0.4
5,372,245 - Pf6N2E2_4643 0.14 -0.3
5,372,535 + Pf6N2E2_4643 0.31 +0.4
5,372,535 + Pf6N2E2_4643 0.31 +0.4
5,372,535 + Pf6N2E2_4643 0.31 +0.4
5,372,535 + Pf6N2E2_4643 0.31 +0.4
5,372,536 - Pf6N2E2_4643 0.31 +1.4
5,372,616 + Pf6N2E2_4643 0.35 -0.6
5,372,616 + Pf6N2E2_4643 0.35 -1.2
5,372,616 + Pf6N2E2_4643 0.35 -1.2
5,372,616 + Pf6N2E2_4643 0.35 -0.8
5,372,617 - Pf6N2E2_4643 0.35 -0.3
5,372,617 - Pf6N2E2_4643 0.35 +0.4
5,372,617 - Pf6N2E2_4643 0.35 +0.4
5,372,617 - Pf6N2E2_4643 0.35 -0.6
5,372,625 + Pf6N2E2_4643 0.36 -1.6
5,372,677 + Pf6N2E2_4643 0.39 -0.6
5,372,677 + Pf6N2E2_4643 0.39 +0.4
5,372,678 - Pf6N2E2_4643 0.39 +0.4
5,372,682 + Pf6N2E2_4643 0.39 -0.6
5,372,768 + Pf6N2E2_4643 0.44 -1.2
5,372,768 + Pf6N2E2_4643 0.44 -1.6
5,372,768 + Pf6N2E2_4643 0.44 +0.4
5,372,803 + Pf6N2E2_4643 0.46 +0.4
5,372,803 + Pf6N2E2_4643 0.46 -1.2
5,372,804 - Pf6N2E2_4643 0.46 -0.1
5,372,804 - Pf6N2E2_4643 0.46 -1.1
5,372,804 - Pf6N2E2_4643 0.46 -0.7
5,372,804 - Pf6N2E2_4643 0.46 +0.4
5,372,804 - Pf6N2E2_4643 0.46 -1.4
5,372,840 + Pf6N2E2_4643 0.48 +0.4
5,372,840 + Pf6N2E2_4643 0.48 +0.4
5,372,840 + Pf6N2E2_4643 0.48 -0.6
5,372,840 + Pf6N2E2_4643 0.48 +0.4
5,372,840 + Pf6N2E2_4643 0.48 -0.6
5,372,840 + Pf6N2E2_4643 0.48 -0.6
5,372,840 + Pf6N2E2_4643 0.48 +0.4
5,372,840 + Pf6N2E2_4643 0.48 +0.4
5,372,841 - Pf6N2E2_4643 0.48 +0.4
5,372,841 - Pf6N2E2_4643 0.48 +0.4
5,372,841 - Pf6N2E2_4643 0.48 +0.4
5,372,841 - Pf6N2E2_4643 0.48 -1.6
5,372,841 - Pf6N2E2_4643 0.48 +0.4
5,372,841 - Pf6N2E2_4643 0.48 -0.4
5,372,912 + Pf6N2E2_4643 0.53 -0.6
5,372,976 + Pf6N2E2_4643 0.56 -1.2
5,372,977 - Pf6N2E2_4643 0.56 -0.1
5,373,030 - Pf6N2E2_4643 0.59 +0.4
5,373,031 + Pf6N2E2_4643 0.59 -2.2
5,373,031 + Pf6N2E2_4643 0.59 +0.4
5,373,031 + Pf6N2E2_4643 0.59 -0.6
5,373,031 + Pf6N2E2_4643 0.59 -1.9
5,373,031 + Pf6N2E2_4643 0.59 +0.4
5,373,031 + Pf6N2E2_4643 0.59 -0.6
5,373,031 + Pf6N2E2_4643 0.59 -0.6
5,373,031 + Pf6N2E2_4643 0.59 -1.6
5,373,032 - Pf6N2E2_4643 0.59 -0.6
5,373,032 - Pf6N2E2_4643 0.59 -0.6
5,373,032 - Pf6N2E2_4643 0.59 -0.5
5,373,032 - Pf6N2E2_4643 0.59 +0.4
5,373,032 - Pf6N2E2_4643 0.59 -0.6
5,373,032 - Pf6N2E2_4643 0.59 +0.4
5,373,032 - Pf6N2E2_4643 0.59 +0.4
5,373,032 - Pf6N2E2_4643 0.59 +0.1
5,373,035 + Pf6N2E2_4643 0.60 -1.6
5,373,050 + Pf6N2E2_4643 0.61 +0.4
5,373,050 + Pf6N2E2_4643 0.61 -1.2
5,373,050 + Pf6N2E2_4643 0.61 +0.4
5,373,051 - Pf6N2E2_4643 0.61 -0.0
5,373,051 - Pf6N2E2_4643 0.61 +0.4
5,373,255 + Pf6N2E2_4643 0.72 +0.6
5,373,346 - Pf6N2E2_4643 0.78 +0.4
5,373,346 - Pf6N2E2_4643 0.78 -0.6
5,373,391 - Pf6N2E2_4643 0.80 +0.4
5,373,435 + Pf6N2E2_4643 0.83 -1.2
5,373,491 + Pf6N2E2_4643 0.86 -0.6
5,373,630 + +0.4
5,373,678 + -0.5
5,373,678 + +0.4
5,373,679 - +0.4
5,373,679 - +0.4
5,373,679 - +0.4
5,373,762 + -0.4
5,373,762 + -1.9
5,373,762 + -1.2
5,373,762 + -0.4
5,373,763 - +0.4
5,373,763 - -0.5
5,373,763 - +0.4
5,373,774 - -1.3
5,373,786 - -0.6
5,373,786 - -0.6
5,373,786 - -1.2
5,373,897 + +0.4
5,373,898 - -0.6
5,373,898 - +0.4
5,373,898 - -0.6
5,373,943 - -1.0
5,373,964 + +0.4
5,373,988 + -1.9
5,373,988 + +0.1
5,373,996 - +0.4
5,373,996 - -1.2
5,373,996 - +0.4
5,374,083 + -2.0
5,374,109 - +0.3
5,374,141 - +0.4
5,374,229 + -0.6
5,374,230 - -2.7
5,374,230 - +0.4
5,374,230 - +0.4
5,374,230 - +0.4
5,374,548 + Pf6N2E2_4644 0.31 -0.6
5,374,690 + Pf6N2E2_4644 0.43 +0.1
5,374,690 + Pf6N2E2_4644 0.43 -0.6
5,374,690 + Pf6N2E2_4644 0.43 -0.2
5,374,690 + Pf6N2E2_4644 0.43 -0.6
5,374,690 + Pf6N2E2_4644 0.43 -0.6
5,374,690 + Pf6N2E2_4644 0.43 -0.6
5,374,690 + Pf6N2E2_4644 0.43 +0.4
5,374,691 - Pf6N2E2_4644 0.43 -0.6
5,374,691 - Pf6N2E2_4644 0.43 -0.6
5,374,691 - Pf6N2E2_4644 0.43 -0.8
5,374,691 - Pf6N2E2_4644 0.43 -1.6
5,374,691 - Pf6N2E2_4644 0.43 -0.6
5,374,691 - Pf6N2E2_4644 0.43 +0.4
5,374,699 - Pf6N2E2_4644 0.44 +0.4

Or see this region's nucleotide sequence