Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4288

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
4,993,986	+		Pf6N2E2_4286	0.45	+0.5
4,993,987	-		Pf6N2E2_4286	0.45	-1.1
4,993,987	-		Pf6N2E2_4286	0.45	-0.8
4,993,987	-		Pf6N2E2_4286	0.45	+0.5
4,994,022	+		Pf6N2E2_4286	0.53	-0.9
4,994,022	+		Pf6N2E2_4286	0.53	+0.5
4,994,022	+		Pf6N2E2_4286	0.53	-0.5
4,994,022	+		Pf6N2E2_4286	0.53	-0.9
4,994,022	+		Pf6N2E2_4286	0.53	-0.5
4,994,148	+		Pf6N2E2_4286	0.81	-0.5
4,994,148	+		Pf6N2E2_4286	0.81	-0.1
4,994,148	+		Pf6N2E2_4286	0.81	-0.5
4,994,148	+		Pf6N2E2_4286	0.81	+0.5
4,994,148	+		Pf6N2E2_4286	0.81	-1.5
4,994,148	+		Pf6N2E2_4286	0.81	-0.5
4,994,149	-		Pf6N2E2_4286	0.82	+0.5
4,994,149	-		Pf6N2E2_4286	0.82	+0.5
4,994,149	-		Pf6N2E2_4286	0.82	+0.1
4,994,149	-		Pf6N2E2_4286	0.82	+0.5
4,994,160	+		Pf6N2E2_4286	0.84	+0.5
4,994,160	+		Pf6N2E2_4286	0.84	+0.5
4,994,160	+		Pf6N2E2_4286	0.84	+0.5
4,994,160	+		Pf6N2E2_4286	0.84	+2.1
4,994,160	+		Pf6N2E2_4286	0.84	-0.5
4,994,161	-		Pf6N2E2_4286	0.84	+0.5
4,994,161	-		Pf6N2E2_4286	0.84	-1.4
4,994,161	-		Pf6N2E2_4286	0.84	+0.5
4,994,231	-				+0.5
4,994,231	-				-0.7
4,994,257	+				-0.5
4,994,257	+				+0.5
4,994,257	+				-0.5
4,994,258	-				-0.5
4,994,423	+		Pf6N2E2_4287	0.30	-1.5
4,994,424	-		Pf6N2E2_4287	0.30	+0.5
4,994,544	-		Pf6N2E2_4287	0.48	+0.5
4,994,561	+		Pf6N2E2_4287	0.51	-1.5
4,994,561	+		Pf6N2E2_4287	0.51	+1.1
4,994,561	+		Pf6N2E2_4287	0.51	-0.2
4,994,561	+		Pf6N2E2_4287	0.51	+0.5
4,994,561	+		Pf6N2E2_4287	0.51	-0.4
4,994,561	+		Pf6N2E2_4287	0.51	-0.3
4,994,561	+		Pf6N2E2_4287	0.51	-0.3
4,994,562	-		Pf6N2E2_4287	0.51	+0.1
4,994,562	-		Pf6N2E2_4287	0.51	-0.5
4,994,606	+		Pf6N2E2_4287	0.58	-0.5
4,994,607	-		Pf6N2E2_4287	0.58	+0.5
4,994,624	+		Pf6N2E2_4287	0.61	+1.2
4,994,624	+		Pf6N2E2_4287	0.61	-0.5
4,994,624	+		Pf6N2E2_4287	0.61	-1.1
4,994,624	+		Pf6N2E2_4287	0.61	-0.2
4,994,624	+		Pf6N2E2_4287	0.61	-0.5
4,994,625	-		Pf6N2E2_4287	0.61	+0.5
4,994,625	-		Pf6N2E2_4287	0.61	+0.5
4,994,870	+				-1.1
4,994,870	+				+0.5
4,994,870	+				-1.1
4,994,870	+				-0.2
4,994,870	+				+0.5
4,994,870	+				-0.5
4,994,870	+				-1.3
4,994,870	+				-0.6
4,994,870	+				-0.5
4,994,870	+				+0.5
4,994,870	+				-0.3
4,994,870	+				-2.3
4,994,870	+				-0.5
4,994,871	-				+0.5
4,994,871	-				+0.5
4,994,871	-				+0.5
4,994,871	-				+0.5
4,994,871	-				+0.5
4,994,871	-				-1.3
4,994,871	-				-0.5
4,994,905	+				-0.5
4,994,905	+				+0.5
4,994,905	+				-0.5
4,994,906	-				-0.8
4,994,906	-				-1.1
4,994,906	-				+0.5
4,994,906	-				-0.5
4,994,928	-				+0.5
4,994,928	-				-1.4
4,994,928	-				-0.5
4,995,056	+				-1.1
4,995,056	+				-0.5
4,995,056	+				-0.3
4,995,056	+				+0.5
4,995,057	-				-1.3
4,995,081	+				-1.1
4,995,081	+				-0.5
4,995,081	+				-1.1
4,995,081	+				+0.5
4,995,082	-				-0.5
4,995,082	-				-1.5
4,995,082	-				-0.8
4,995,173	+		Pf6N2E2_4288	0.13	+0.5
4,995,174	-		Pf6N2E2_4288	0.13	-0.5
4,995,185	+		Pf6N2E2_4288	0.14	+0.5
4,995,186	-		Pf6N2E2_4288	0.14	+0.9
4,995,186	-		Pf6N2E2_4288	0.14	-0.5
4,995,227	+		Pf6N2E2_4288	0.16	+0.5
4,995,227	+		Pf6N2E2_4288	0.16	-0.9
4,995,227	+		Pf6N2E2_4288	0.16	+0.5
4,995,227	+		Pf6N2E2_4288	0.16	+0.5
4,995,227	+		Pf6N2E2_4288	0.16	-0.5
4,995,227	+		Pf6N2E2_4288	0.16	-1.1
4,995,227	+		Pf6N2E2_4288	0.16	+0.5
4,995,227	+		Pf6N2E2_4288	0.16	-1.1
4,995,227	+		Pf6N2E2_4288	0.16	-1.1
4,995,228	-		Pf6N2E2_4288	0.16	+0.5
4,995,228	-		Pf6N2E2_4288	0.16	-0.5
4,995,228	-		Pf6N2E2_4288	0.16	-0.5
4,995,228	-		Pf6N2E2_4288	0.16	-1.1
4,995,228	-		Pf6N2E2_4288	0.16	-1.5
4,995,228	-		Pf6N2E2_4288	0.16	-0.5
4,995,228	-		Pf6N2E2_4288	0.16	-1.5
4,995,228	-		Pf6N2E2_4288	0.16	-1.5
4,995,228	-		Pf6N2E2_4288	0.16	-0.8
4,995,228	-		Pf6N2E2_4288	0.16	-0.5
4,995,228	-		Pf6N2E2_4288	0.16	-3.1
4,995,270	+		Pf6N2E2_4288	0.19	-0.5
4,995,537	-		Pf6N2E2_4288	0.36	-0.8
4,995,537	-		Pf6N2E2_4288	0.36	+0.5
4,995,584	+		Pf6N2E2_4288	0.39	+0.5
4,995,585	-		Pf6N2E2_4288	0.39	+0.5
4,995,836	+		Pf6N2E2_4288	0.56	+0.5
4,995,836	+		Pf6N2E2_4288	0.56	-2.1
4,995,836	+		Pf6N2E2_4288	0.56	-1.1
4,995,836	+		Pf6N2E2_4288	0.56	-0.8
4,995,837	-		Pf6N2E2_4288	0.56	-0.5
4,995,837	-		Pf6N2E2_4288	0.56	-0.5
4,995,837	-		Pf6N2E2_4288	0.56	+0.5
4,995,837	-		Pf6N2E2_4288	0.56	+0.5
4,995,837	-		Pf6N2E2_4288	0.56	+0.5
4,995,933	+		Pf6N2E2_4288	0.62	-1.5
4,995,948	-		Pf6N2E2_4288	0.63	+0.5
4,995,948	-		Pf6N2E2_4288	0.63	-0.5
4,995,948	-		Pf6N2E2_4288	0.63	-1.9
4,995,960	-		Pf6N2E2_4288	0.64	+0.1
4,996,022	+		Pf6N2E2_4288	0.68	-1.7
4,996,023	-		Pf6N2E2_4288	0.68	-0.5
4,996,023	-		Pf6N2E2_4288	0.68	+0.5
4,996,070	+		Pf6N2E2_4288	0.71	-0.8
4,996,071	-		Pf6N2E2_4288	0.71	+0.5
4,996,400	+				-0.5
4,996,400	+				-3.8
4,996,400	+				+0.8
4,996,400	+				-0.8
4,996,401	-				-0.9
4,996,401	-				+0.5
4,996,401	-				+0.5
4,996,714	+				+0.5
4,996,714	+				-1.1
4,996,714	+				-0.1
4,996,714	+				-1.1
4,996,714	+				+0.5
4,996,714	+				-0.5
4,996,714	+				+0.5
4,996,714	+				-1.1
4,996,715	-				-0.5
4,996,715	-				+0.5
4,996,715	-				+0.5
4,996,715	-				-1.1
4,996,715	-				-0.3
4,996,715	-				-0.5
4,996,715	-				-0.6
4,996,715	-				-0.4
4,996,715	-				-0.5
4,996,816	+				+0.5
4,996,817	-				-0.0
4,996,817	-				+0.2
4,996,817	-				+0.5
4,996,881	-				-0.5
4,996,881	-				-0.3
4,996,881	-				-0.5
4,996,887	+				+0.5
4,996,887	+				-1.1
4,996,888	-				-0.4
4,996,888	-				+0.5
4,996,954	+				+0.5
4,996,955	-				-0.5
4,996,955	-				-0.5
4,996,955	-				-0.7
4,996,955	-				-1.1
4,997,039	+		Pf6N2E2_4289	0.10	-1.1
4,997,152	+		Pf6N2E2_4289	0.13	+0.5