Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2545

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
3,006,623	+		Pf6N2E2_2544	0.38	+0.3
3,006,674	+		Pf6N2E2_2544	0.43	+0.3
3,006,674	+		Pf6N2E2_2544	0.43	-0.5
3,006,675	-		Pf6N2E2_2544	0.43	-0.3
3,006,675	-		Pf6N2E2_2544	0.43	+0.3
3,006,675	-		Pf6N2E2_2544	0.43	+0.3
3,006,830	-		Pf6N2E2_2544	0.56	-0.7
3,006,981	-		Pf6N2E2_2544	0.68	+0.3
3,007,058	+		Pf6N2E2_2544	0.75	+0.3
3,007,059	-		Pf6N2E2_2544	0.75	-0.7
3,007,061	+		Pf6N2E2_2544	0.75	+0.3
3,007,062	-		Pf6N2E2_2544	0.75	+0.3
3,007,062	-		Pf6N2E2_2544	0.75	+0.3
3,007,202	+		Pf6N2E2_2544	0.87	+0.3
3,007,202	+		Pf6N2E2_2544	0.87	-0.7
3,007,202	+		Pf6N2E2_2544	0.87	-1.1
3,007,203	-		Pf6N2E2_2544	0.87	-1.4
3,007,203	-		Pf6N2E2_2544	0.87	+0.3
3,007,203	-		Pf6N2E2_2544	0.87	-1.2
3,007,203	-		Pf6N2E2_2544	0.87	-0.7
3,007,517	+				-1.3
3,007,518	-				-0.7
3,007,518	-				+0.3
3,007,518	-				-0.5
3,007,518	-				-0.7
3,007,756	+				-0.7
3,007,757	-				-1.7
3,007,813	+		Pf6N2E2_2546	0.29	+0.3
3,007,813	+		Pf6N2E2_2546	0.29	+0.3
3,007,813	+		Pf6N2E2_2546	0.29	+0.3
3,007,904	+		Pf6N2E2_2546	0.74	+0.3
3,007,904	+		Pf6N2E2_2546	0.74	+0.3
3,007,932	+		Pf6N2E2_2546	0.88	+0.3
3,007,932	+		Pf6N2E2_2546	0.88	+0.3
3,007,947	+				+0.3
3,007,947	+				-0.7
3,007,947	+				-0.7
3,007,947	+				+0.3
3,007,947	+				-0.7
3,007,948	-				-0.5
3,007,948	-				-0.7
3,007,948	-				-2.2
3,008,044	-				+0.3
3,008,044	-				+0.3
3,008,104	-				+0.3
3,008,104	-				+1.5
3,008,238	+		Pf6N2E2_2547	0.35	-0.7
3,008,238	+		Pf6N2E2_2547	0.35	+0.3
3,008,238	+		Pf6N2E2_2547	0.35	-2.3
3,008,238	+		Pf6N2E2_2547	0.35	-1.3
3,008,238	+		Pf6N2E2_2547	0.35	+0.9
3,008,238	+		Pf6N2E2_2547	0.35	-0.3
3,008,239	-		Pf6N2E2_2547	0.35	+0.3
3,008,239	-		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	-1.7
3,008,240	+		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	-0.7
3,008,240	+		Pf6N2E2_2547	0.35	-1.3
3,008,240	+		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	-1.7
3,008,240	+		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	+0.3
3,008,240	+		Pf6N2E2_2547	0.35	-2.0
3,008,241	-		Pf6N2E2_2547	0.35	+0.3
3,008,241	-		Pf6N2E2_2547	0.35	-1.0
3,008,241	-		Pf6N2E2_2547	0.35	+0.8
3,008,241	-		Pf6N2E2_2547	0.35	-1.0
3,008,253	-		Pf6N2E2_2547	0.39	+0.3
3,008,261	+		Pf6N2E2_2547	0.41	-0.6
3,008,276	+		Pf6N2E2_2547	0.45	-1.3
3,008,276	+		Pf6N2E2_2547	0.45	+0.3
3,008,277	-		Pf6N2E2_2547	0.45	+0.3
3,008,385	-		Pf6N2E2_2547	0.74	-1.3
3,008,429	+		Pf6N2E2_2547	0.85	-0.7
3,008,429	+		Pf6N2E2_2547	0.85	-0.7
3,008,429	+		Pf6N2E2_2547	0.85	-1.5
3,008,429	+		Pf6N2E2_2547	0.85	-1.0
3,008,430	-		Pf6N2E2_2547	0.85	-0.7
3,008,430	-		Pf6N2E2_2547	0.85	-0.7
3,008,430	-		Pf6N2E2_2547	0.85	+0.3
3,008,430	-		Pf6N2E2_2547	0.85	+0.3
3,008,651	+		Pf6N2E2_2548	0.19	+0.3
3,008,651	+		Pf6N2E2_2548	0.19	-0.7
3,008,651	+				+0.3
3,008,651	+		Pf6N2E2_2548	0.19	-0.7
3,008,651	+		Pf6N2E2_2548	0.19	-1.3
3,008,651	+		Pf6N2E2_2548	0.19	-0.7
3,008,651	+		Pf6N2E2_2548	0.19	+0.3
3,008,651	+		Pf6N2E2_2548	0.19	+0.3
3,008,651	+		Pf6N2E2_2548	0.19	+0.3
3,008,652	-		Pf6N2E2_2548	0.19	-1.3
3,008,652	-		Pf6N2E2_2548	0.19	-0.1
3,008,652	-		Pf6N2E2_2548	0.19	-1.3
3,008,652	-		Pf6N2E2_2548	0.19	-3.5
3,008,652	-		Pf6N2E2_2548	0.19	-0.7
3,008,652	-		Pf6N2E2_2548	0.19	-0.7
3,008,652	-		Pf6N2E2_2548	0.19	+0.3
3,008,657	+		Pf6N2E2_2548	0.20	-0.3
3,008,657	+		Pf6N2E2_2548	0.20	+0.3
3,008,657	+		Pf6N2E2_2548	0.20	-0.7
3,008,658	-		Pf6N2E2_2548	0.20	-0.4
3,008,658	-		Pf6N2E2_2548	0.20	+0.3
3,008,658	-		Pf6N2E2_2548	0.20	-0.7