Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2229

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
2,640,274	+				+0.3
2,640,274	+				-1.7
2,640,274	+				+0.3
2,640,274	+				+0.3
2,640,275	-				-1.3
2,640,275	-				-0.4
2,640,275	-				-0.7
2,640,373	+				-1.3
2,640,374	-				+0.3
2,640,374	-				+0.3
2,640,374	-				+0.3
2,640,390	+				+0.3
2,640,478	+		Pf6N2E2_2228	0.14	-0.8
2,640,478	+		Pf6N2E2_2228	0.14	-1.3
2,640,478	+		Pf6N2E2_2228	0.14	+0.3
2,640,478	+		Pf6N2E2_2228	0.14	-1.3
2,640,479	-		Pf6N2E2_2228	0.14	-0.7
2,640,479	-		Pf6N2E2_2228	0.14	-1.3
2,640,479	-		Pf6N2E2_2228	0.14	+0.3
2,640,479	-		Pf6N2E2_2228	0.14	+0.3
2,640,479	-		Pf6N2E2_2228	0.14	-0.7
2,640,480	+		Pf6N2E2_2228	0.15	+0.3
2,640,481	-		Pf6N2E2_2228	0.15	-0.4
2,640,890	-		Pf6N2E2_2228	0.60	+0.3
2,641,006	-		Pf6N2E2_2228	0.73	+0.3
2,641,118	+		Pf6N2E2_2228	0.86	-0.7
2,641,118	+		Pf6N2E2_2228	0.86	+0.3
2,641,118	+		Pf6N2E2_2228	0.86	-0.2
2,641,119	-		Pf6N2E2_2228	0.86	+0.3
2,641,160	-				+0.3
2,641,160	-				-0.7
2,641,169	-				-1.5
2,641,243	+				-2.1
2,641,243	+				-0.7
2,641,244	-				+0.3
2,641,347	-				-1.7
2,641,644	+		Pf6N2E2_2229	0.35	-0.7
2,641,729	+		Pf6N2E2_2229	0.42	+0.3
2,641,729	+		Pf6N2E2_2229	0.42	-1.3
2,641,730	-		Pf6N2E2_2229	0.42	-0.7
2,641,736	-		Pf6N2E2_2229	0.43	-0.7
2,641,736	-		Pf6N2E2_2229	0.43	+0.3
2,641,736	-		Pf6N2E2_2229	0.43	-1.4
2,641,865	-		Pf6N2E2_2229	0.54	+0.3
2,641,865	-		Pf6N2E2_2229	0.54	-0.2
2,641,865	-		Pf6N2E2_2229	0.54	+0.3
2,641,868	+		Pf6N2E2_2229	0.54	-2.1
2,641,868	+		Pf6N2E2_2229	0.54	-0.7
2,641,869	-		Pf6N2E2_2229	0.54	+0.3
2,641,869	-		Pf6N2E2_2229	0.54	-0.7
2,642,180	+		Pf6N2E2_2229	0.81	-1.3
2,642,180	+		Pf6N2E2_2229	0.81	+0.3
2,642,268	+		Pf6N2E2_2229	0.89	-1.7
2,642,354	+				-0.4
2,642,448	+				-0.6
2,642,472	+				-0.7
2,642,473	-				-1.3
2,642,657	+				+0.3
2,642,658	-				+0.3
2,642,700	-				+0.3
2,642,760	-				-0.7
2,642,857	+		Pf6N2E2_2230	0.13	-0.7
2,642,934	+		Pf6N2E2_2230	0.19	-1.4
2,642,935	-		Pf6N2E2_2230	0.19	-0.5
2,642,982	-		Pf6N2E2_2230	0.23	-0.3
2,643,114	-		Pf6N2E2_2230	0.34	-0.1
2,643,307	+		Pf6N2E2_2230	0.50	+0.3
2,643,316	-		Pf6N2E2_2230	0.51	+0.3
2,643,335	-		Pf6N2E2_2230	0.53	-1.3