Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_163

Experiment: Ying_Nucleobase14 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_162 and Pf6N2E2_163 overlap by 4 nucleotidesPf6N2E2_163 and Pf6N2E2_164 are separated by 3 nucleotides Pf6N2E2_162 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 215,296 to 216,849 _162 Pf6N2E2_163 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 216,846 to 217,823 _163 Pf6N2E2_164 - Ribose operon repressor, at 217,827 to 218,846 _164 Position (kb) 216 217 218Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.893 kb on + strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.894 kb on - strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.989 kb on + strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 215.990 kb on - strand, within Pf6N2E2_162at 216.087 kb on + strand, within Pf6N2E2_162at 216.156 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.616 kb on + strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.617 kb on - strand, within Pf6N2E2_162at 216.888 kb on + strandat 216.889 kb on - strandat 216.903 kb on + strandat 216.904 kb on - strandat 216.975 kb on + strand, within Pf6N2E2_163at 216.975 kb on + strand, within Pf6N2E2_163at 216.990 kb on - strand, within Pf6N2E2_163at 217.302 kb on + strand, within Pf6N2E2_163at 217.302 kb on + strand, within Pf6N2E2_163at 217.303 kb on - strand, within Pf6N2E2_163at 217.303 kb on - strand, within Pf6N2E2_163at 217.492 kb on - strand, within Pf6N2E2_163at 217.505 kb on - strand, within Pf6N2E2_163at 217.631 kb on + strand, within Pf6N2E2_163at 217.631 kb on + strand, within Pf6N2E2_163at 217.791 kb on + strandat 217.792 kb on - strandat 217.847 kb on - strandat 217.959 kb on + strand, within Pf6N2E2_164at 217.959 kb on + strand, within Pf6N2E2_164at 217.960 kb on - strand, within Pf6N2E2_164at 218.043 kb on + strand, within Pf6N2E2_164at 218.044 kb on - strand, within Pf6N2E2_164at 218.044 kb on - strand, within Pf6N2E2_164at 218.076 kb on + strand, within Pf6N2E2_164at 218.076 kb on + strand, within Pf6N2E2_164at 218.076 kb on + strand, within Pf6N2E2_164at 218.145 kb on + strand, within Pf6N2E2_164at 218.145 kb on + strand, within Pf6N2E2_164at 218.291 kb on - strand, within Pf6N2E2_164at 218.310 kb on + strand, within Pf6N2E2_164at 218.310 kb on + strand, within Pf6N2E2_164at 218.311 kb on - strand, within Pf6N2E2_164at 218.319 kb on + strand, within Pf6N2E2_164at 218.320 kb on - strand, within Pf6N2E2_164at 218.387 kb on + strand, within Pf6N2E2_164at 218.524 kb on + strand, within Pf6N2E2_164at 218.524 kb on + strand, within Pf6N2E2_164at 218.525 kb on - strand, within Pf6N2E2_164at 218.525 kb on - strand, within Pf6N2E2_164at 218.662 kb on - strand, within Pf6N2E2_164at 218.662 kb on - strand, within Pf6N2E2_164at 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.790 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 3
remove
215,893 + Pf6N2E2_162 0.38 +0.3
215,893 + Pf6N2E2_162 0.38 -0.7
215,893 + Pf6N2E2_162 0.38 -2.9
215,893 + Pf6N2E2_162 0.38 -1.3
215,893 + Pf6N2E2_162 0.38 -2.5
215,893 + Pf6N2E2_162 0.38 -1.3
215,894 - Pf6N2E2_162 0.38 -0.7
215,894 - Pf6N2E2_162 0.38 +0.3
215,894 - Pf6N2E2_162 0.38 +0.3
215,894 - Pf6N2E2_162 0.38 -1.1
215,894 - Pf6N2E2_162 0.38 -0.7
215,989 + Pf6N2E2_162 0.45 +0.3
215,989 + Pf6N2E2_162 0.45 -3.2
215,989 + Pf6N2E2_162 0.45 +0.3
215,989 + Pf6N2E2_162 0.45 -3.0
215,990 - Pf6N2E2_162 0.45 -2.0
215,990 - Pf6N2E2_162 0.45 -1.7
215,990 - Pf6N2E2_162 0.45 -0.7
216,087 + Pf6N2E2_162 0.51 -0.7
216,156 + Pf6N2E2_162 0.55 -5.3
216,616 + Pf6N2E2_162 0.85 +0.3
216,616 + Pf6N2E2_162 0.85 +0.3
216,616 + Pf6N2E2_162 0.85 -3.7
216,616 + Pf6N2E2_162 0.85 -3.3
216,617 - Pf6N2E2_162 0.85 +0.3
216,617 - Pf6N2E2_162 0.85 -1.3
216,617 - Pf6N2E2_162 0.85 -3.8
216,617 - Pf6N2E2_162 0.85 +0.3
216,888 + +0.3
216,889 - -0.7
216,903 + +0.3
216,904 - -0.7
216,975 + Pf6N2E2_163 0.13 +0.3
216,975 + Pf6N2E2_163 0.13 +0.3
216,990 - Pf6N2E2_163 0.15 +0.3
217,302 + Pf6N2E2_163 0.47 +0.3
217,302 + Pf6N2E2_163 0.47 +0.3
217,303 - Pf6N2E2_163 0.47 +0.3
217,303 - Pf6N2E2_163 0.47 +0.3
217,492 - Pf6N2E2_163 0.66 -4.8
217,505 - Pf6N2E2_163 0.67 -2.0
217,631 + Pf6N2E2_163 0.80 -0.7
217,631 + Pf6N2E2_163 0.80 -2.0
217,791 + +0.3
217,792 - +0.3
217,847 - +0.3
217,959 + Pf6N2E2_164 0.13 +0.3
217,959 + Pf6N2E2_164 0.13 -3.4
217,960 - Pf6N2E2_164 0.13 -1.3
218,043 + Pf6N2E2_164 0.21 +0.3
218,044 - Pf6N2E2_164 0.21 +0.3
218,044 - Pf6N2E2_164 0.21 -0.7
218,076 + Pf6N2E2_164 0.24 +0.3
218,076 + Pf6N2E2_164 0.24 -1.4
218,076 + Pf6N2E2_164 0.24 -0.7
218,145 + Pf6N2E2_164 0.31 -0.7
218,145 + Pf6N2E2_164 0.31 +0.3
218,291 - Pf6N2E2_164 0.45 -6.9
218,310 + Pf6N2E2_164 0.47 -0.7
218,310 + Pf6N2E2_164 0.47 -0.7
218,311 - Pf6N2E2_164 0.47 +0.3
218,319 + Pf6N2E2_164 0.48 -1.3
218,320 - Pf6N2E2_164 0.48 -2.3
218,387 + Pf6N2E2_164 0.55 -3.2
218,524 + Pf6N2E2_164 0.68 -1.3
218,524 + Pf6N2E2_164 0.68 -0.7
218,525 - Pf6N2E2_164 0.68 -1.3
218,525 - Pf6N2E2_164 0.68 +0.3
218,662 - Pf6N2E2_164 0.82 -2.3
218,662 - Pf6N2E2_164 0.82 -3.4
218,789 + +0.3
218,789 + +0.3
218,789 + +0.3
218,789 + +0.3
218,789 + -0.7
218,789 + +2.6
218,789 + +0.3
218,789 + +1.5
218,789 + +0.3
218,789 + +1.3
218,790 - +0.3
218,790 - -3.7
218,790 - -3.9

Or see this region's nucleotide sequence