Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1447

Experiment: Ying_Nucleobase14 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 3
1,696,375	-		Pf6N2E2_1446	0.41	-0.6
1,696,375	-		Pf6N2E2_1446	0.41	+0.1
1,696,476	+		Pf6N2E2_1446	0.54	+0.1
1,696,477	-		Pf6N2E2_1446	0.54	-0.4
1,696,719	-		Pf6N2E2_1446	0.86	+0.1
1,696,798	+				-1.0
1,696,798	+				+0.1
1,696,799	-				+0.1
1,696,799	-				+1.3
1,696,799	-				+0.1
1,696,799	-				-0.9
1,696,799	-				-0.4
1,696,799	-				-0.9
1,696,799	-				+0.1
1,696,799	-				-1.5
1,696,799	-				+0.1
1,696,805	-				+0.1
1,696,805	-				-0.9
1,696,805	-				-0.9
1,696,805	-				-1.3
1,696,990	+				-0.9
1,696,990	+				-0.9
1,697,026	+				+0.1
1,697,027	-				-0.8
1,697,047	+				+0.1
1,697,047	+				-0.9
1,697,047	+				-0.1
1,697,048	-				-0.4
1,697,055	+				+0.1
1,697,055	+				-0.1
1,697,117	-				-0.5
1,697,142	+				-0.5
1,697,142	+				+0.3
1,697,142	+				+0.1
1,697,142	+				-2.9
1,697,143	-				+0.1
1,697,145	+				-1.5
1,697,146	-				-0.9
1,697,337	+		Pf6N2E2_1447	0.12	-0.9
1,697,341	+		Pf6N2E2_1447	0.13	+0.1
1,697,341	+		Pf6N2E2_1447	0.13	-1.9
1,697,341	+		Pf6N2E2_1447	0.13	+0.1
1,697,341	+		Pf6N2E2_1447	0.13	+1.1
1,697,341	+		Pf6N2E2_1447	0.13	+0.5
1,697,341	+		Pf6N2E2_1447	0.13	+0.1
1,697,341	+		Pf6N2E2_1447	0.13	+0.1
1,697,342	-				+0.1
1,697,380	+		Pf6N2E2_1447	0.19	+0.1
1,697,381	-		Pf6N2E2_1447	0.20	+0.1
1,697,457	+		Pf6N2E2_1447	0.32	-0.9
1,697,457	+		Pf6N2E2_1447	0.32	-0.9
1,697,457	+		Pf6N2E2_1447	0.32	-0.5
1,697,457	+		Pf6N2E2_1447	0.32	+0.1
1,697,497	+		Pf6N2E2_1447	0.39	-0.9
1,697,498	-		Pf6N2E2_1447	0.39	+0.3
1,697,498	-		Pf6N2E2_1447	0.39	+0.5
1,697,520	+		Pf6N2E2_1447	0.43	+0.1
1,697,520	+		Pf6N2E2_1447	0.43	+0.1
1,697,521	-		Pf6N2E2_1447	0.43	+0.1
1,697,521	-		Pf6N2E2_1447	0.43	+0.1
1,697,745	+		Pf6N2E2_1447	0.81	-1.5
1,697,745	+		Pf6N2E2_1447	0.81	+0.1
1,697,746	-		Pf6N2E2_1447	0.81	-0.9
1,697,746	-		Pf6N2E2_1447	0.81	+0.6
1,697,746	-		Pf6N2E2_1447	0.81	+0.1
1,697,746	-		Pf6N2E2_1447	0.81	+0.1
1,697,756	+		Pf6N2E2_1447	0.83	+0.1
1,697,795	+		Pf6N2E2_1447	0.89	+1.2
1,697,854	+				+0.4
1,697,854	+				-0.9
1,697,854	+				+0.1
1,697,854	+				+0.1
1,697,854	+				-0.5
1,697,854	+				-0.9
1,697,855	-				-0.3
1,697,855	-				+0.1
1,697,856	+				+0.5
1,697,857	-				+0.1
1,698,062	-				+0.1
1,698,141	-		Pf6N2E2_1448	0.21	-1.7
1,698,173	+		Pf6N2E2_1448	0.30	-0.9
1,698,173	+		Pf6N2E2_1448	0.30	+0.1
1,698,173	+		Pf6N2E2_1448	0.30	-0.6
1,698,174	-		Pf6N2E2_1448	0.30	+0.3
1,698,296	+		Pf6N2E2_1448	0.66	-0.9
1,698,401	-				-1.5
1,698,435	+		Pf6N2E2_1449	0.22	+0.1
1,698,515	+				-0.9
1,698,516	-				+0.1
1,698,521	+				-0.9
1,698,522	-				+0.1
1,698,527	+				+0.1
1,698,527	+				-0.9
1,698,528	-				+0.1
1,698,528	-				+0.1
1,698,558	+				+0.1
1,698,558	+				+0.1
1,698,626	+		Pf6N2E2_1450	0.27	+1.7
1,698,639	-		Pf6N2E2_1450	0.32	-0.4
1,698,797	+				-0.9