Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5909

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
6,726,687	-				+0.3
6,726,700	+				-0.7
6,726,727	+				+1.1
6,726,778	+				+0.3
6,726,778	+				+0.3
6,726,784	-				+0.3
6,726,829	+				+0.3
6,726,829	+				+0.3
6,726,829	+				-0.7
6,726,829	+				-1.0
6,726,829	+				-0.7
6,726,830	-				-1.3
6,727,172	+		Pf6N2E2_5908	0.26	+0.3
6,727,172	+		Pf6N2E2_5908	0.26	+0.3
6,727,173	-		Pf6N2E2_5908	0.26	+0.3
6,727,173	-		Pf6N2E2_5908	0.26	+0.3
6,727,173	-		Pf6N2E2_5908	0.26	-1.7
6,727,173	-		Pf6N2E2_5908	0.26	+0.3
6,727,173	-		Pf6N2E2_5908	0.26	-0.7
6,727,174	+		Pf6N2E2_5908	0.26	-0.7
6,727,175	-		Pf6N2E2_5908	0.27	+0.3
6,727,175	-		Pf6N2E2_5908	0.27	-0.7
6,727,206	+		Pf6N2E2_5908	0.32	+0.3
6,727,207	-		Pf6N2E2_5908	0.33	-1.3
6,727,207	-		Pf6N2E2_5908	0.33	-0.7
6,727,243	+		Pf6N2E2_5908	0.39	+0.3
6,727,244	-		Pf6N2E2_5908	0.40	-0.7
6,727,244	-		Pf6N2E2_5908	0.40	-0.4
6,727,247	+		Pf6N2E2_5908	0.40	-0.6
6,727,247	+		Pf6N2E2_5908	0.40	+0.3
6,727,247	+		Pf6N2E2_5908	0.40	-1.0
6,727,247	+		Pf6N2E2_5908	0.40	+0.3
6,727,247	+		Pf6N2E2_5908	0.40	+0.3
6,727,248	-		Pf6N2E2_5908	0.40	-0.6
6,727,248	-		Pf6N2E2_5908	0.40	+0.3
6,727,248	-		Pf6N2E2_5908	0.40	-0.7
6,727,248	-		Pf6N2E2_5908	0.40	-0.7
6,727,320	-		Pf6N2E2_5908	0.54	-0.7
6,727,445	+		Pf6N2E2_5908	0.77	+0.3
6,727,446	-		Pf6N2E2_5908	0.78	-1.3
6,727,446	-		Pf6N2E2_5908	0.78	+0.3
6,727,562	+				+0.3
6,727,563	-				+0.3
6,727,563	-				-0.1
6,727,563	-				-0.5
6,727,563	-				+0.3
6,727,838	+		Pf6N2E2_5909	0.20	+0.3
6,727,838	+		Pf6N2E2_5909	0.20	-0.7
6,727,839	-		Pf6N2E2_5909	0.20	-0.7
6,727,909	+		Pf6N2E2_5909	0.26	-2.0
6,727,910	-		Pf6N2E2_5909	0.26	+0.0
6,727,942	+		Pf6N2E2_5909	0.28	-0.7
6,727,942	+		Pf6N2E2_5909	0.28	-1.7
6,727,942	+		Pf6N2E2_5909	0.28	-0.7
6,727,943	-		Pf6N2E2_5909	0.28	+0.3
6,728,089	+		Pf6N2E2_5909	0.39	+0.3
6,728,089	+		Pf6N2E2_5909	0.39	-0.7
6,728,089	+		Pf6N2E2_5909	0.39	+0.3
6,728,089	+		Pf6N2E2_5909	0.39	+0.3
6,728,090	-		Pf6N2E2_5909	0.39	-0.4
6,728,090	-		Pf6N2E2_5909	0.39	+0.3
6,728,090	-		Pf6N2E2_5909	0.39	-0.7
6,728,090	-		Pf6N2E2_5909	0.39	-2.3
6,728,090	-		Pf6N2E2_5909	0.39	-0.7
6,728,090	-		Pf6N2E2_5909	0.39	-0.7
6,728,116	+		Pf6N2E2_5909	0.41	+0.3
6,728,116	+		Pf6N2E2_5909	0.41	+0.3
6,728,116	+		Pf6N2E2_5909	0.41	+0.3
6,728,117	-		Pf6N2E2_5909	0.41	-0.7
6,728,117	-		Pf6N2E2_5909	0.41	-0.6
6,728,117	-		Pf6N2E2_5909	0.41	+0.3
6,728,203	+		Pf6N2E2_5909	0.48	+0.3
6,728,204	-		Pf6N2E2_5909	0.48	-0.7
6,728,204	-		Pf6N2E2_5909	0.48	+0.3
6,728,353	+		Pf6N2E2_5909	0.59	-0.7
6,728,374	+		Pf6N2E2_5909	0.61	+1.3
6,728,617	+		Pf6N2E2_5909	0.79	+0.3
6,728,618	-		Pf6N2E2_5909	0.79	+0.3
6,728,618	-		Pf6N2E2_5909	0.79	-0.7
6,728,654	-		Pf6N2E2_5909	0.82	+0.3
6,728,698	+		Pf6N2E2_5909	0.85	-0.7
6,728,698	+		Pf6N2E2_5909	0.85	-1.3
6,728,719	+		Pf6N2E2_5909	0.87	-1.3
6,728,720	-		Pf6N2E2_5909	0.87	-1.7
6,728,720	-		Pf6N2E2_5909	0.87	+0.3
6,728,720	-		Pf6N2E2_5909	0.87	-0.4
6,728,720	-		Pf6N2E2_5909	0.87	+0.3
6,728,720	-		Pf6N2E2_5909	0.87	+0.3
6,728,737	+		Pf6N2E2_5909	0.88	+0.3
6,728,737	+		Pf6N2E2_5909	0.88	+0.3
6,728,737	+		Pf6N2E2_5909	0.88	-0.4
6,728,737	+		Pf6N2E2_5909	0.88	+0.3
6,728,737	+		Pf6N2E2_5909	0.88	-0.9
6,728,737	+		Pf6N2E2_5909	0.88	-2.0
6,728,738	-		Pf6N2E2_5909	0.88	-1.3
6,728,738	-		Pf6N2E2_5909	0.88	-0.7
6,728,738	-		Pf6N2E2_5909	0.88	+0.3
6,728,738	-		Pf6N2E2_5909	0.88	-1.3
6,728,812	+				+0.3
6,728,869	+				-0.7
6,728,869	+				-0.7
6,728,869	+				-1.3
6,728,869	+				+0.3
6,728,869	+				-0.7
6,728,869	+				-0.7
6,728,870	-				+0.3
6,728,870	-				-1.3
6,728,870	-				-1.3
6,728,870	-				+0.3
6,728,922	+				+0.3
6,728,922	+				+0.3
6,728,923	-				+0.4
6,729,156	-		Pf6N2E2_5910	0.24	-1.4
6,729,644	+		Pf6N2E2_5910	0.89	-0.7
6,729,645	-		Pf6N2E2_5910	0.89	-0.7
6,729,782	+				+0.3
6,729,782	+				-0.7
6,729,782	+				-0.7
6,729,782	+				+0.3
6,729,783	-				+0.3
6,729,837	+				+0.3
6,729,837	+				+0.3
6,729,837	+				-0.7
6,729,837	+				-0.2
6,729,837	+				+0.3
6,729,837	+				-0.1
6,729,838	-				+0.3
6,729,838	-				+0.3