Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5123 and Pf6N2E2_5124 overlap by 11 nucleotides Pf6N2E2_5124 and Pf6N2E2_5125 are separated by 110 nucleotides
Pf6N2E2_5123 - Two-component sensor PilS, at 5,906,777 to 5,908,366
_5123
Pf6N2E2_5124 - FIG00953647: hypothetical protein, at 5,908,356 to 5,908,589
_5124
Pf6N2E2_5125 - Mobile element protein, at 5,908,700 to 5,910,058
_5125
Position (kb) 5908
5909 Strain fitness (log2 ratio) -1
0
1 at 5907.365 kb on + strand, within Pf6N2E2_5123 at 5907.365 kb on + strand, within Pf6N2E2_5123 at 5907.365 kb on + strand, within Pf6N2E2_5123 at 5907.366 kb on - strand, within Pf6N2E2_5123 at 5907.366 kb on - strand, within Pf6N2E2_5123 at 5907.497 kb on + strand, within Pf6N2E2_5123 at 5907.519 kb on + strand, within Pf6N2E2_5123 at 5907.519 kb on + strand, within Pf6N2E2_5123 at 5907.520 kb on - strand, within Pf6N2E2_5123 at 5907.642 kb on + strand, within Pf6N2E2_5123 at 5907.642 kb on + strand, within Pf6N2E2_5123 at 5907.642 kb on + strand, within Pf6N2E2_5123 at 5907.643 kb on - strand, within Pf6N2E2_5123 at 5907.674 kb on + strand, within Pf6N2E2_5123 at 5907.674 kb on + strand, within Pf6N2E2_5123 at 5907.674 kb on + strand, within Pf6N2E2_5123 at 5907.675 kb on - strand, within Pf6N2E2_5123 at 5907.675 kb on - strand, within Pf6N2E2_5123 at 5907.909 kb on + strand, within Pf6N2E2_5123 at 5907.909 kb on + strand, within Pf6N2E2_5123 at 5908.018 kb on + strand, within Pf6N2E2_5123 at 5908.191 kb on + strand, within Pf6N2E2_5123 at 5908.192 kb on - strand, within Pf6N2E2_5123 at 5908.192 kb on - strand, within Pf6N2E2_5123 at 5908.405 kb on + strand, within Pf6N2E2_5124 at 5908.405 kb on + strand, within Pf6N2E2_5124 at 5908.405 kb on + strand, within Pf6N2E2_5124 at 5908.405 kb on + strand, within Pf6N2E2_5124 at 5908.406 kb on - strand, within Pf6N2E2_5124 at 5908.406 kb on - strand, within Pf6N2E2_5124 at 5908.449 kb on + strand, within Pf6N2E2_5124 at 5908.449 kb on + strand, within Pf6N2E2_5124 at 5908.449 kb on + strand, within Pf6N2E2_5124 at 5908.450 kb on - strand, within Pf6N2E2_5124 at 5908.578 kb on + strand at 5908.579 kb on - strand at 5908.579 kb on - strand at 5908.579 kb on - strand at 5908.579 kb on - strand at 5908.655 kb on + strand at 5908.668 kb on + strand at 5908.668 kb on + strand at 5908.668 kb on + strand at 5908.668 kb on + strand at 5908.668 kb on + strand at 5908.669 kb on - strand at 5908.692 kb on - strand at 5908.705 kb on + strand at 5908.705 kb on + strand at 5908.706 kb on - strand at 5908.706 kb on - strand at 5908.723 kb on + strand at 5908.724 kb on - strand at 5908.803 kb on + strand at 5908.803 kb on + strand at 5908.803 kb on + strand at 5908.804 kb on - strand at 5908.804 kb on - strand at 5908.804 kb on - strand at 5908.804 kb on - strand at 5908.804 kb on - strand at 5908.836 kb on + strand, within Pf6N2E2_5125 at 5908.836 kb on + strand, within Pf6N2E2_5125 at 5908.836 kb on + strand, within Pf6N2E2_5125 at 5908.836 kb on + strand, within Pf6N2E2_5125 at 5908.837 kb on - strand, within Pf6N2E2_5125 at 5908.837 kb on - strand, within Pf6N2E2_5125 at 5908.880 kb on - strand, within Pf6N2E2_5125 at 5909.044 kb on + strand, within Pf6N2E2_5125 at 5909.044 kb on + strand, within Pf6N2E2_5125 at 5909.044 kb on + strand, within Pf6N2E2_5125 at 5909.045 kb on - strand, within Pf6N2E2_5125 at 5909.045 kb on - strand, within Pf6N2E2_5125 at 5909.045 kb on - strand, within Pf6N2E2_5125 at 5909.045 kb on - strand, within Pf6N2E2_5125 at 5909.045 kb on - strand, within Pf6N2E2_5125 at 5909.047 kb on - strand, within Pf6N2E2_5125 at 5909.047 kb on - strand, within Pf6N2E2_5125 at 5909.113 kb on - strand, within Pf6N2E2_5125 at 5909.113 kb on - strand, within Pf6N2E2_5125 at 5909.113 kb on - strand, within Pf6N2E2_5125 at 5909.313 kb on + strand, within Pf6N2E2_5125 at 5909.387 kb on + strand, within Pf6N2E2_5125 at 5909.586 kb on + strand, within Pf6N2E2_5125
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 5,907,365 + Pf6N2E2_5123 0.37 +0.4 5,907,365 + Pf6N2E2_5123 0.37 -0.6 5,907,365 + Pf6N2E2_5123 0.37 -1.2 5,907,366 - Pf6N2E2_5123 0.37 +0.4 5,907,366 - Pf6N2E2_5123 0.37 +0.4 5,907,497 + Pf6N2E2_5123 0.45 -0.6 5,907,519 + Pf6N2E2_5123 0.47 -0.7 5,907,519 + Pf6N2E2_5123 0.47 +0.4 5,907,520 - Pf6N2E2_5123 0.47 +0.4 5,907,642 + Pf6N2E2_5123 0.54 -1.2 5,907,642 + Pf6N2E2_5123 0.54 +0.4 5,907,642 + Pf6N2E2_5123 0.54 -0.1 5,907,643 - Pf6N2E2_5123 0.54 +0.4 5,907,674 + Pf6N2E2_5123 0.56 +0.4 5,907,674 + Pf6N2E2_5123 0.56 -0.6 5,907,674 + Pf6N2E2_5123 0.56 -1.2 5,907,675 - Pf6N2E2_5123 0.56 +0.4 5,907,675 - Pf6N2E2_5123 0.56 +0.4 5,907,909 + Pf6N2E2_5123 0.71 +0.4 5,907,909 + Pf6N2E2_5123 0.71 +0.4 5,908,018 + Pf6N2E2_5123 0.78 -1.6 5,908,191 + Pf6N2E2_5123 0.89 -1.2 5,908,192 - Pf6N2E2_5123 0.89 -0.4 5,908,192 - Pf6N2E2_5123 0.89 +0.4 5,908,405 + Pf6N2E2_5124 0.21 +1.0 5,908,405 + Pf6N2E2_5124 0.21 -0.3 5,908,405 + Pf6N2E2_5124 0.21 -0.4 5,908,405 + Pf6N2E2_5124 0.21 -0.6 5,908,406 - Pf6N2E2_5124 0.21 +0.4 5,908,406 - Pf6N2E2_5124 0.21 -0.3 5,908,449 + Pf6N2E2_5124 0.40 -0.6 5,908,449 + Pf6N2E2_5124 0.40 -1.4 5,908,449 + Pf6N2E2_5124 0.40 -0.3 5,908,450 - Pf6N2E2_5124 0.40 +0.4 5,908,578 + -1.2 5,908,579 - +0.4 5,908,579 - -0.5 5,908,579 - +0.4 5,908,579 - +0.4 5,908,655 + +0.4 5,908,668 + -0.6 5,908,668 + -0.6 5,908,668 + +0.4 5,908,668 + +0.4 5,908,668 + -0.8 5,908,669 - -1.2 5,908,692 - +0.4 5,908,705 + +0.4 5,908,705 + -0.6 5,908,706 - +0.4 5,908,706 - -1.2 5,908,723 + -0.8 5,908,724 - -0.0 5,908,803 + +0.8 5,908,803 + +0.4 5,908,803 + +0.4 5,908,804 - +0.4 5,908,804 - -1.6 5,908,804 - -0.6 5,908,804 - +0.0 5,908,804 - +0.4 5,908,836 + Pf6N2E2_5125 0.10 -0.6 5,908,836 + Pf6N2E2_5125 0.10 +0.4 5,908,836 + Pf6N2E2_5125 0.10 -0.6 5,908,836 + Pf6N2E2_5125 0.10 +1.4 5,908,837 - Pf6N2E2_5125 0.10 -0.6 5,908,837 - Pf6N2E2_5125 0.10 -0.6 5,908,880 - Pf6N2E2_5125 0.13 -1.6 5,909,044 + Pf6N2E2_5125 0.25 +0.4 5,909,044 + Pf6N2E2_5125 0.25 +0.6 5,909,044 + Pf6N2E2_5125 0.25 -0.6 5,909,045 - Pf6N2E2_5125 0.25 -0.5 5,909,045 - Pf6N2E2_5125 0.25 -1.2 5,909,045 - Pf6N2E2_5125 0.25 -0.6 5,909,045 - Pf6N2E2_5125 0.25 +0.4 5,909,045 - Pf6N2E2_5125 0.25 -0.6 5,909,047 - Pf6N2E2_5125 0.26 +0.4 5,909,047 - Pf6N2E2_5125 0.26 -0.6 5,909,113 - Pf6N2E2_5125 0.30 +0.4 5,909,113 - Pf6N2E2_5125 0.30 +1.4 5,909,113 - Pf6N2E2_5125 0.30 +0.4 5,909,313 + Pf6N2E2_5125 0.45 +0.4 5,909,387 + Pf6N2E2_5125 0.51 +0.4 5,909,586 + Pf6N2E2_5125 0.65 +0.4
Or see this region's nucleotide sequence