Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4667

Experiment: Ying_Nucleobase14 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4666 and Pf6N2E2_4667 are separated by 42 nucleotidesPf6N2E2_4667 and Pf6N2E2_4668 are separated by 4 nucleotidesPf6N2E2_4668 and Pf6N2E2_4669 are separated by 123 nucleotides Pf6N2E2_4666 - Sensory box/GGDEF family protein, at 5,395,495 to 5,397,618 _4666 Pf6N2E2_4667 - COG1451: Predicted metal-dependent hydrolase, at 5,397,661 to 5,398,164 _4667 Pf6N2E2_4668 - FIG00953367: hypothetical protein, at 5,398,169 to 5,398,465 _4668 Pf6N2E2_4669 - ElaA protein, at 5,398,589 to 5,399,041 _4669 Position (kb) 5397 5398 5399Strain fitness (log2 ratio) -2 -1 0 1 2at 5396.761 kb on + strand, within Pf6N2E2_4666at 5396.761 kb on + strand, within Pf6N2E2_4666at 5396.761 kb on + strand, within Pf6N2E2_4666at 5396.761 kb on + strand, within Pf6N2E2_4666at 5396.762 kb on - strand, within Pf6N2E2_4666at 5396.762 kb on - strand, within Pf6N2E2_4666at 5396.762 kb on - strand, within Pf6N2E2_4666at 5396.800 kb on + strand, within Pf6N2E2_4666at 5396.800 kb on + strand, within Pf6N2E2_4666at 5396.886 kb on + strand, within Pf6N2E2_4666at 5396.887 kb on - strand, within Pf6N2E2_4666at 5396.893 kb on + strand, within Pf6N2E2_4666at 5396.893 kb on + strand, within Pf6N2E2_4666at 5396.893 kb on + strand, within Pf6N2E2_4666at 5396.894 kb on - strand, within Pf6N2E2_4666at 5396.894 kb on - strand, within Pf6N2E2_4666at 5396.906 kb on + strand, within Pf6N2E2_4666at 5396.906 kb on + strand, within Pf6N2E2_4666at 5396.906 kb on + strand, within Pf6N2E2_4666at 5396.906 kb on + strand, within Pf6N2E2_4666at 5396.907 kb on - strand, within Pf6N2E2_4666at 5396.907 kb on - strand, within Pf6N2E2_4666at 5396.907 kb on - strand, within Pf6N2E2_4666at 5396.907 kb on - strand, within Pf6N2E2_4666at 5397.046 kb on + strand, within Pf6N2E2_4666at 5397.046 kb on + strand, within Pf6N2E2_4666at 5397.047 kb on - strand, within Pf6N2E2_4666at 5397.123 kb on + strand, within Pf6N2E2_4666at 5397.123 kb on + strand, within Pf6N2E2_4666at 5397.123 kb on + strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.124 kb on - strand, within Pf6N2E2_4666at 5397.127 kb on - strand, within Pf6N2E2_4666at 5397.444 kb on + strandat 5397.444 kb on + strandat 5397.444 kb on + strandat 5397.496 kb on + strandat 5397.496 kb on + strandat 5397.496 kb on + strandat 5397.496 kb on + strandat 5397.496 kb on + strandat 5397.497 kb on - strandat 5397.497 kb on - strandat 5397.497 kb on - strandat 5397.497 kb on - strandat 5397.526 kb on + strandat 5397.526 kb on + strandat 5397.527 kb on - strandat 5397.527 kb on - strandat 5397.527 kb on - strandat 5397.527 kb on - strandat 5397.527 kb on - strandat 5397.527 kb on - strandat 5397.625 kb on + strandat 5397.676 kb on + strandat 5397.677 kb on - strandat 5397.677 kb on - strandat 5397.677 kb on - strandat 5397.749 kb on - strand, within Pf6N2E2_4667at 5397.749 kb on - strand, within Pf6N2E2_4667at 5397.802 kb on + strand, within Pf6N2E2_4667at 5397.802 kb on + strand, within Pf6N2E2_4667at 5397.802 kb on + strand, within Pf6N2E2_4667at 5397.802 kb on + strand, within Pf6N2E2_4667at 5397.802 kb on + strand, within Pf6N2E2_4667at 5397.832 kb on + strand, within Pf6N2E2_4667at 5397.832 kb on + strand, within Pf6N2E2_4667at 5397.832 kb on + strand, within Pf6N2E2_4667at 5397.832 kb on + strand, within Pf6N2E2_4667at 5397.832 kb on + strand, within Pf6N2E2_4667at 5397.833 kb on - strand, within Pf6N2E2_4667at 5397.833 kb on - strand, within Pf6N2E2_4667at 5398.066 kb on + strand, within Pf6N2E2_4667at 5398.066 kb on + strand, within Pf6N2E2_4667at 5398.066 kb on + strand, within Pf6N2E2_4667at 5398.066 kb on + strand, within Pf6N2E2_4667at 5398.066 kb on + strand, within Pf6N2E2_4667at 5398.067 kb on - strand, within Pf6N2E2_4667at 5398.067 kb on - strand, within Pf6N2E2_4667at 5398.067 kb on - strand, within Pf6N2E2_4667at 5398.126 kb on + strandat 5398.127 kb on - strandat 5398.211 kb on + strand, within Pf6N2E2_4668at 5398.211 kb on + strand, within Pf6N2E2_4668at 5398.211 kb on + strand, within Pf6N2E2_4668at 5398.212 kb on - strand, within Pf6N2E2_4668at 5398.220 kb on + strand, within Pf6N2E2_4668at 5398.220 kb on + strand, within Pf6N2E2_4668at 5398.220 kb on + strand, within Pf6N2E2_4668at 5398.221 kb on - strand, within Pf6N2E2_4668at 5398.221 kb on - strand, within Pf6N2E2_4668at 5398.221 kb on - strand, within Pf6N2E2_4668at 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.555 kb on + strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.556 kb on - strandat 5398.603 kb on + strandat 5398.604 kb on - strandat 5398.604 kb on - strandat 5398.604 kb on - strandat 5398.604 kb on - strandat 5398.632 kb on + strandat 5398.632 kb on + strandat 5398.632 kb on + strandat 5398.632 kb on + strandat 5398.633 kb on - strandat 5398.633 kb on - strandat 5398.633 kb on - strandat 5398.633 kb on - strandat 5398.668 kb on + strand, within Pf6N2E2_4669at 5398.669 kb on - strand, within Pf6N2E2_4669at 5398.672 kb on - strand, within Pf6N2E2_4669at 5398.672 kb on - strand, within Pf6N2E2_4669at 5398.672 kb on - strand, within Pf6N2E2_4669at 5398.672 kb on - strand, within Pf6N2E2_4669at 5398.672 kb on - strand, within Pf6N2E2_4669at 5398.854 kb on + strand, within Pf6N2E2_4669at 5398.854 kb on + strand, within Pf6N2E2_4669at 5398.855 kb on - strand, within Pf6N2E2_4669at 5398.897 kb on + strand, within Pf6N2E2_4669at 5398.976 kb on + strand, within Pf6N2E2_4669at 5398.986 kb on + strand, within Pf6N2E2_4669at 5398.986 kb on + strand, within Pf6N2E2_4669at 5398.986 kb on + strand, within Pf6N2E2_4669at 5398.986 kb on + strand, within Pf6N2E2_4669at 5398.986 kb on + strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5398.987 kb on - strand, within Pf6N2E2_4669at 5399.020 kb on + strandat 5399.020 kb on + strandat 5399.020 kb on + strandat 5399.020 kb on + strandat 5399.021 kb on - strandat 5399.021 kb on - strandat 5399.072 kb on + strandat 5399.075 kb on + strandat 5399.075 kb on + strandat 5399.075 kb on + strandat 5399.075 kb on + strandat 5399.075 kb on + strandat 5399.076 kb on - strandat 5399.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3
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5,396,761 + Pf6N2E2_4666 0.60 +0.4
5,396,761 + Pf6N2E2_4666 0.60 +0.4
5,396,761 + Pf6N2E2_4666 0.60 +0.4
5,396,761 + Pf6N2E2_4666 0.60 -1.1
5,396,762 - Pf6N2E2_4666 0.60 -1.1
5,396,762 - Pf6N2E2_4666 0.60 -1.0
5,396,762 - Pf6N2E2_4666 0.60 -0.6
5,396,800 + Pf6N2E2_4666 0.61 -1.1
5,396,800 + Pf6N2E2_4666 0.61 -1.0
5,396,886 + Pf6N2E2_4666 0.65 +0.4
5,396,887 - Pf6N2E2_4666 0.66 -1.1
5,396,893 + Pf6N2E2_4666 0.66 +0.4
5,396,893 + Pf6N2E2_4666 0.66 -0.6
5,396,893 + Pf6N2E2_4666 0.66 -0.8
5,396,894 - Pf6N2E2_4666 0.66 -1.1
5,396,894 - Pf6N2E2_4666 0.66 +0.4
5,396,906 + Pf6N2E2_4666 0.66 -0.5
5,396,906 + Pf6N2E2_4666 0.66 -0.7
5,396,906 + Pf6N2E2_4666 0.66 -0.3
5,396,906 + Pf6N2E2_4666 0.66 +0.4
5,396,907 - Pf6N2E2_4666 0.66 -1.9
5,396,907 - Pf6N2E2_4666 0.66 -2.1
5,396,907 - Pf6N2E2_4666 0.66 +0.4
5,396,907 - Pf6N2E2_4666 0.66 +0.4
5,397,046 + Pf6N2E2_4666 0.73 -0.6
5,397,046 + Pf6N2E2_4666 0.73 -2.6
5,397,047 - Pf6N2E2_4666 0.73 -0.3
5,397,123 + Pf6N2E2_4666 0.77 +0.4
5,397,123 + Pf6N2E2_4666 0.77 +0.4
5,397,123 + Pf6N2E2_4666 0.77 -0.8
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 -1.6
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 +0.4
5,397,124 - Pf6N2E2_4666 0.77 -1.4
5,397,127 - Pf6N2E2_4666 0.77 +0.4
5,397,444 + -0.6
5,397,444 + -0.6
5,397,444 + +0.2
5,397,496 + -1.6
5,397,496 + -0.9
5,397,496 + -0.6
5,397,496 + -1.1
5,397,496 + -0.6
5,397,497 - +0.4
5,397,497 - -0.6
5,397,497 - +0.4
5,397,497 - -0.2
5,397,526 + -0.6
5,397,526 + -0.6
5,397,527 - +0.4
5,397,527 - -0.6
5,397,527 - -0.6
5,397,527 - -1.9
5,397,527 - -0.9
5,397,527 - -0.6
5,397,625 + -0.7
5,397,676 + -0.6
5,397,677 - -0.6
5,397,677 - +2.0
5,397,677 - +0.4
5,397,749 - Pf6N2E2_4667 0.17 -1.6
5,397,749 - Pf6N2E2_4667 0.17 +0.4
5,397,802 + Pf6N2E2_4667 0.28 -0.6
5,397,802 + Pf6N2E2_4667 0.28 -0.1
5,397,802 + Pf6N2E2_4667 0.28 -0.6
5,397,802 + Pf6N2E2_4667 0.28 -0.6
5,397,802 + Pf6N2E2_4667 0.28 -0.6
5,397,832 + Pf6N2E2_4667 0.34 -0.8
5,397,832 + Pf6N2E2_4667 0.34 -1.4
5,397,832 + Pf6N2E2_4667 0.34 -0.6
5,397,832 + Pf6N2E2_4667 0.34 -0.6
5,397,832 + Pf6N2E2_4667 0.34 +0.4
5,397,833 - Pf6N2E2_4667 0.34 -2.7
5,397,833 - Pf6N2E2_4667 0.34 -0.6
5,398,066 + Pf6N2E2_4667 0.80 +0.4
5,398,066 + Pf6N2E2_4667 0.80 -0.4
5,398,066 + Pf6N2E2_4667 0.80 +0.2
5,398,066 + Pf6N2E2_4667 0.80 -0.3
5,398,066 + Pf6N2E2_4667 0.80 +0.4
5,398,067 - Pf6N2E2_4667 0.81 -1.9
5,398,067 - Pf6N2E2_4667 0.81 +0.4
5,398,067 - Pf6N2E2_4667 0.81 -0.8
5,398,126 + -1.5
5,398,127 - -1.1
5,398,211 + Pf6N2E2_4668 0.14 -1.1
5,398,211 + Pf6N2E2_4668 0.14 -0.8
5,398,211 + Pf6N2E2_4668 0.14 -0.6
5,398,212 - Pf6N2E2_4668 0.14 +0.4
5,398,220 + Pf6N2E2_4668 0.17 +0.4
5,398,220 + Pf6N2E2_4668 0.17 +0.4
5,398,220 + Pf6N2E2_4668 0.17 -0.1
5,398,221 - Pf6N2E2_4668 0.18 -0.4
5,398,221 - Pf6N2E2_4668 0.18 +0.4
5,398,221 - Pf6N2E2_4668 0.18 -0.6
5,398,555 + -1.6
5,398,555 + -0.5
5,398,555 + -0.0
5,398,555 + -0.7
5,398,555 + +0.4
5,398,555 + +0.4
5,398,555 + -1.4
5,398,555 + -0.4
5,398,556 - +0.4
5,398,556 - -0.6
5,398,556 - -0.3
5,398,556 - -0.8
5,398,556 - +0.4
5,398,556 - +0.4
5,398,556 - -0.6
5,398,556 - +0.4
5,398,603 + -0.4
5,398,604 - +0.4
5,398,604 - +0.4
5,398,604 - -0.6
5,398,604 - +0.4
5,398,632 + -1.6
5,398,632 + -1.1
5,398,632 + -0.6
5,398,632 + -1.0
5,398,633 - -0.6
5,398,633 - -0.6
5,398,633 - -0.6
5,398,633 - +0.4
5,398,668 + Pf6N2E2_4669 0.17 +0.4
5,398,669 - Pf6N2E2_4669 0.18 -1.1
5,398,672 - Pf6N2E2_4669 0.18 -0.6
5,398,672 - Pf6N2E2_4669 0.18 -2.3
5,398,672 - Pf6N2E2_4669 0.18 +0.4
5,398,672 - Pf6N2E2_4669 0.18 +0.4
5,398,672 - Pf6N2E2_4669 0.18 -1.9
5,398,854 + Pf6N2E2_4669 0.58 -1.1
5,398,854 + Pf6N2E2_4669 0.58 -0.9
5,398,855 - Pf6N2E2_4669 0.59 -0.5
5,398,897 + Pf6N2E2_4669 0.68 +0.4
5,398,976 + Pf6N2E2_4669 0.85 -1.1
5,398,986 + Pf6N2E2_4669 0.88 -0.6
5,398,986 + Pf6N2E2_4669 0.88 +0.4
5,398,986 + Pf6N2E2_4669 0.88 -0.2
5,398,986 + Pf6N2E2_4669 0.88 -0.8
5,398,986 + Pf6N2E2_4669 0.88 -1.9
5,398,987 - Pf6N2E2_4669 0.88 -0.7
5,398,987 - Pf6N2E2_4669 0.88 +0.4
5,398,987 - Pf6N2E2_4669 0.88 -1.1
5,398,987 - Pf6N2E2_4669 0.88 -0.6
5,398,987 - Pf6N2E2_4669 0.88 +0.4
5,398,987 - Pf6N2E2_4669 0.88 +0.4
5,398,987 - Pf6N2E2_4669 0.88 -1.1
5,399,020 + -0.6
5,399,020 + +0.4
5,399,020 + +0.4
5,399,020 + -1.1
5,399,021 - +0.4
5,399,021 - +0.0
5,399,072 + +0.4
5,399,075 + -0.7
5,399,075 + -1.1
5,399,075 + -0.6
5,399,075 + -0.6
5,399,075 + +0.4
5,399,076 - +0.4
5,399,076 - -0.6

Or see this region's nucleotide sequence