Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4501

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
5,232,602	-		Pf6N2E2_4499	0.62	+0.5
5,232,679	-		Pf6N2E2_4499	0.80	-1.1
5,232,696	-		Pf6N2E2_4499	0.84	+0.5
5,232,696	-		Pf6N2E2_4499	0.84	+0.5
5,232,752	-				+0.5
5,232,752	-				+0.5
5,232,752	-				+0.5
5,233,131	-				-1.1
5,233,131	-				+0.5
5,233,131	-				-0.5
5,233,134	-				-0.5
5,233,134	-				+0.5
5,233,134	-				+0.5
5,233,158	-				-1.5
5,233,158	-				-0.9
5,233,190	-				-0.5
5,233,805	+		Pf6N2E2_4501	0.59	-1.5
5,233,805	+		Pf6N2E2_4501	0.59	-1.1
5,233,806	-		Pf6N2E2_4501	0.59	+0.5
5,233,806	-		Pf6N2E2_4501	0.59	-0.6
5,233,823	-		Pf6N2E2_4501	0.61	+0.9
5,233,895	-		Pf6N2E2_4501	0.70	-0.3
5,233,895	-		Pf6N2E2_4501	0.70	-0.6
5,233,898	+		Pf6N2E2_4501	0.71	-1.0
5,233,970	+		Pf6N2E2_4501	0.80	-0.3
5,233,970	+		Pf6N2E2_4501	0.80	-0.5
5,233,970	+		Pf6N2E2_4501	0.80	-1.0
5,233,970	+		Pf6N2E2_4501	0.80	-0.2
5,233,970	+		Pf6N2E2_4501	0.80	-0.5
5,233,970	+		Pf6N2E2_4501	0.80	+0.5
5,233,971	-		Pf6N2E2_4501	0.80	-0.6
5,233,971	-		Pf6N2E2_4501	0.80	-0.3
5,233,971	-		Pf6N2E2_4501	0.80	+0.5
5,233,971	-		Pf6N2E2_4501	0.80	-0.4
5,234,090	+				+0.5
5,234,091	-				+0.7
5,234,091	-				+0.5
5,234,255	+				+0.5
5,234,256	-				-0.7
5,234,296	+				-1.1
5,234,296	+				+0.5
5,234,297	-				+0.5
5,234,303	+				-1.9
5,234,303	+				-1.1
5,234,303	+				+0.5
5,234,304	-				-1.1
5,234,304	-				-0.5
5,234,304	-				-0.7
5,234,369	-				-0.5
5,234,382	+				+0.5
5,234,396	+				-1.1
5,234,397	-				-1.4
5,234,397	-				+0.5
5,234,434	+				-0.5
5,234,434	+				+0.5
5,234,434	+				-0.5
5,234,434	+				-0.4
5,234,434	+				+0.5
5,234,441	+				+0.5
5,234,441	+				-1.1
5,234,557	+		Pf6N2E2_4502	0.18	-0.5
5,234,557	+		Pf6N2E2_4502	0.18	-1.9
5,234,557	+		Pf6N2E2_4502	0.18	-0.8
5,234,557	+		Pf6N2E2_4502	0.18	-1.5
5,234,557	+		Pf6N2E2_4502	0.18	-1.5
5,234,558	-		Pf6N2E2_4502	0.18	-0.4
5,234,558	-		Pf6N2E2_4502	0.18	+0.5
5,234,558	-		Pf6N2E2_4502	0.18	-1.1
5,234,677	+		Pf6N2E2_4502	0.38	-0.5
5,234,678	-		Pf6N2E2_4502	0.39	-0.5
5,234,678	-		Pf6N2E2_4502	0.39	-0.5
5,234,711	+		Pf6N2E2_4502	0.44	-0.5
5,234,746	-		Pf6N2E2_4502	0.50	+0.5
5,234,787	+		Pf6N2E2_4502	0.57	-0.5
5,234,803	+		Pf6N2E2_4502	0.60	-1.1
5,234,804	-		Pf6N2E2_4502	0.60	-0.5
5,235,002	+				+0.5
5,235,069	+				-0.5
5,235,069	+				-0.7
5,235,069	+				-1.1
5,235,069	+				+0.5
5,235,070	-				-0.6
5,235,070	-				-1.4