Experiment: Ying_Nucleobase14 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_26 and Pf6N2E2_27 are separated by 108 nucleotides Pf6N2E2_27 and Pf6N2E2_28 are separated by 306 nucleotides Pf6N2E2_28 and Pf6N2E2_29 are separated by 223 nucleotides
Pf6N2E2_26 - Pirin, at 63,017 to 63,883
_26
Pf6N2E2_27 - Mechanosensitive ion channel, at 63,992 to 65,434
_27
Pf6N2E2_28 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 65,741 to 66,181
_28
Pf6N2E2_29 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 66,405 to 66,905
_29
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.996 kb on - strand at 62.996 kb on - strand at 64.089 kb on - strand at 64.367 kb on + strand, within Pf6N2E2_27 at 64.367 kb on + strand, within Pf6N2E2_27 at 64.367 kb on + strand, within Pf6N2E2_27 at 64.367 kb on + strand, within Pf6N2E2_27 at 64.368 kb on - strand, within Pf6N2E2_27 at 64.368 kb on - strand, within Pf6N2E2_27 at 64.814 kb on + strand, within Pf6N2E2_27 at 64.815 kb on - strand, within Pf6N2E2_27 at 65.279 kb on + strand, within Pf6N2E2_27 at 65.280 kb on - strand, within Pf6N2E2_27 at 65.343 kb on + strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.344 kb on - strand at 65.686 kb on - strand at 65.709 kb on + strand at 65.709 kb on + strand at 65.715 kb on + strand at 65.716 kb on - strand at 65.762 kb on + strand at 65.763 kb on - strand at 66.062 kb on + strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.208 kb on + strand at 66.209 kb on - strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.249 kb on - strand at 66.249 kb on - strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.302 kb on + strand at 66.302 kb on + strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.342 kb on + strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 3 remove 62,996 - -0.4 62,996 - -2.3 64,089 - +0.3 64,367 + Pf6N2E2_27 0.26 -0.7 64,367 + Pf6N2E2_27 0.26 +0.3 64,367 + Pf6N2E2_27 0.26 +0.3 64,367 + Pf6N2E2_27 0.26 -2.7 64,368 - Pf6N2E2_27 0.26 +0.3 64,368 - Pf6N2E2_27 0.26 +0.3 64,814 + Pf6N2E2_27 0.57 +0.3 64,815 - Pf6N2E2_27 0.57 -1.3 65,279 + Pf6N2E2_27 0.89 +0.3 65,280 - Pf6N2E2_27 0.89 +0.3 65,343 + -0.7 65,344 - -0.6 65,344 - +0.3 65,344 - -0.8 65,344 - +0.3 65,344 - +0.3 65,344 - -0.7 65,344 - -0.9 65,686 - +0.3 65,709 + -1.7 65,709 + -1.3 65,715 + +0.3 65,716 - -0.6 65,762 + +1.9 65,763 - -1.3 66,062 + Pf6N2E2_28 0.73 -0.7 66,063 - Pf6N2E2_28 0.73 +0.3 66,063 - Pf6N2E2_28 0.73 -0.7 66,208 + -1.3 66,209 - -0.7 66,248 + +0.7 66,248 + +1.9 66,248 + -0.7 66,248 + +0.3 66,249 - -0.5 66,249 - +0.3 66,296 + +0.3 66,296 + +0.3 66,296 + +0.3 66,297 - +0.3 66,297 - +0.3 66,297 - +0.3 66,302 + +0.3 66,302 + -0.7 66,303 - -1.7 66,303 - -1.7 66,303 - +0.3 66,303 - -2.5 66,303 - +0.3 66,303 - +0.3 66,303 - -1.0 66,342 + +0.3 66,343 - +0.3 66,343 - +0.3 66,343 - -0.7 66,355 + +0.3
Or see this region's nucleotide sequence