Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2341

Experiment: Ying_Nucleobase14 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 3
2,772,853	+		Pf6N2E2_2340	0.30	+0.3
2,773,208	+		Pf6N2E2_2340	0.76	+0.3
2,773,301	+		Pf6N2E2_2340	0.88	-0.7
2,773,302	-		Pf6N2E2_2340	0.88	+0.3
2,773,309	+		Pf6N2E2_2340	0.89	+0.3
2,773,309	+		Pf6N2E2_2340	0.89	+0.3
2,773,309	+		Pf6N2E2_2340	0.89	-0.7
2,773,310	-		Pf6N2E2_2340	0.89	-1.7
2,773,435	+				-0.7
2,773,436	-				+1.3
2,773,436	-				+0.3
2,773,464	-				+0.3
2,773,488	+				+0.3
2,773,488	+				+0.3
2,773,541	-				+0.3
2,773,574	-				+0.3
2,773,744	+				+0.3
2,773,745	-				+0.3
2,773,745	-				-1.7
2,773,746	+				+0.3
2,773,746	+				-0.4
2,773,749	+				+0.3
2,773,975	+		Pf6N2E2_2341	0.17	-0.7
2,774,061	+		Pf6N2E2_2341	0.25	+0.3
2,774,061	+		Pf6N2E2_2341	0.25	-0.7
2,774,061	+		Pf6N2E2_2341	0.25	-0.7
2,774,082	+		Pf6N2E2_2341	0.26	-1.3
2,774,082	+		Pf6N2E2_2341	0.26	+1.6
2,774,082	+		Pf6N2E2_2341	0.26	+1.3
2,774,083	-		Pf6N2E2_2341	0.27	+0.3
2,774,083	-		Pf6N2E2_2341	0.27	+0.8
2,774,083	-		Pf6N2E2_2341	0.27	-0.7
2,774,083	-		Pf6N2E2_2341	0.27	-0.7
2,774,084	+		Pf6N2E2_2341	0.27	-0.7
2,774,085	-		Pf6N2E2_2341	0.27	+0.3
2,774,085	-		Pf6N2E2_2341	0.27	+0.3
2,774,098	+		Pf6N2E2_2341	0.28	-0.7
2,774,098	+		Pf6N2E2_2341	0.28	-0.0
2,774,099	-		Pf6N2E2_2341	0.28	+0.3
2,774,099	-		Pf6N2E2_2341	0.28	+0.3
2,774,265	+		Pf6N2E2_2341	0.42	+0.3
2,774,265	+		Pf6N2E2_2341	0.42	+1.6
2,774,265	+		Pf6N2E2_2341	0.42	+0.3
2,774,266	-		Pf6N2E2_2341	0.42	+0.3
2,774,325	-		Pf6N2E2_2341	0.47	+0.1
2,774,655	+		Pf6N2E2_2341	0.75	+0.3
2,774,993	+				-0.6
2,774,993	+				-0.7
2,774,993	+				-1.3
2,774,994	-				-1.7
2,774,994	-				+0.3
2,775,062	+				-1.3
2,775,063	-				-1.7
2,775,063	-				-0.4
2,775,063	-				-1.2
2,775,063	-				-0.7
2,775,063	-				-1.1
2,775,063	-				-1.0
2,775,063	-				+0.7
2,775,216	-		Pf6N2E2_2342	0.45	-0.7
2,775,394	-				-0.7
2,775,417	+				-1.3
2,775,417	+				+0.3
2,775,418	-				+0.3
2,775,418	-				+0.3
2,775,421	+				+0.3
2,775,421	+				-0.5
2,775,422	-				+0.3
2,775,422	-				+0.3
2,775,422	-				+0.3
2,775,422	-				-0.7
2,775,422	-				+1.8
2,775,422	-				-0.7
2,775,422	-				+0.3
2,775,422	-				-0.5
2,775,422	-				+0.3
2,775,422	-				-1.5
2,775,422	-				-0.7
2,775,439	+				-0.7
2,775,477	+				+0.3
2,775,477	+				-0.5
2,775,485	+				-0.7
2,775,486	-				-0.2
2,775,550	+				+0.3
2,775,551	-				+0.3
2,775,630	-				+0.3
2,775,829	+		Pf6N2E2_2344	0.13	+0.3
2,775,830	-		Pf6N2E2_2344	0.13	-1.7
2,775,830	-		Pf6N2E2_2344	0.13	-0.7
2,775,883	+		Pf6N2E2_2344	0.17	-1.3
2,775,884	-		Pf6N2E2_2344	0.17	+0.3
2,775,884	-		Pf6N2E2_2344	0.17	-1.2
2,775,935	-		Pf6N2E2_2344	0.21	-0.5